Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1712g00006 ATGATACATGAATTTTGCTCCACATGCCTTCACCTATTTCTTCTCTTTAATTTGAACTCACTCTGGTTTAGCCCAAACACAACTGCCTCTGCATCAGGAAATGAGACTGATCATTTGGCATTGCTCAAATTCAAGGAATCAATATCCAATGACCCATATGGTATCTTGGTTTCTTGGAATAGTTCTACCCACTTCTGCAATTGGCATGGAATCACATGCAGCCCCATGTATCAAAGAGTCACTGAGTTGAACCTACAAGGTTATCACTTGTATGGATTCATATCTCCACAAGTTGGCAATCTCTCTTCTTTGAGAAACCTCAATCTCGAAGACAATAGCTTCTACGGGAAAATCCCACAAGAATTGGGTCTATTGTTAAAACTGCAGCAACTTTCTCTCACCAATAACTCGTTGACAGGGGAAATTCCTACAAACTTGACAAGTTGCACTAATCTCAGAGGCTTACAATTGCGAGGAAACAATCTAATTGGCAAAATACCAATTGAAATGGGCTCCCTCCAGAAACTTCAGCAATTGTCCATTGGGAGAAACAATTTAAGTGGAGGAATCCCACCATTCATAGGGAATCTTTCATCCCTAACTGGTTTCTCAGCGAATTATAATAACTTAGAGGGAGATATTCCACAAGAATTATGCAGTCTCAAAAACTTGACAAAGATAGCCGTAGGTGTCAACAAACTATCTGGTACATTTCCCTCTTGTCTTTACAATATGTCATCTCTCACTATAATCTCTGTTGATGGGAATCAATTTAATGGCTCTCTTCCACCCTACATGTTTCACACCCTCCCAAATCTCCAAGTATTTTTAATTGGTGGCAATCAAATCTCAGGTCCAATCCCCATTTCCGTTGCAAATGCTTCTGTCCTTCAATTACTTGATATTCAGGGAAACCATTTCAAGGGACAAGTTCCAAGTTTGGGGAAGTTACAAGATCTTAAATTCCTAGGTTCGTCTCTCAACAATCTAGGTGACAATTCAACTAGGGATTTAGAGTTTTTAAAATCATTGACAAACTGTAGTAAGTTGTATATGCTTGATATATCCAACAATAATTTTGGAGGTAGTTTGCCAAATTCCTTGGGCAATTTATCCTCCCAACTCAGTCAACTATATCTAGGGGGTAATCAGATATCAGGGAAAATTCCTATGGAATTAGGAAATCTAGTTAGTTTAATTCTCTTGAGCATGGGACTTAACCACTTTGAAGGGGTTATTCCATCAGCTTTTGGAAAGTTTCAAAAGTTGCAATATTTAGAATTGTATGGAAACAACCTGTCAGGAAATATACCAACCTTCATAGGCAACCTCAGTCAGTTGTTTCATTTGCGTTTAGGACACAATATATTAGAAGGAAATATTCATCCAAGTATAGGAAACTGTCAAAATTTACAATACCTGGACCTTTCTCAAAACAAACTTACAGGAACCATACCCTTAGAGGTTTTTAGCCTTTCCTCTTTAACAAACTTACTAGACTTGTCACAAAACTCTTTGAGTGGCAATCTACCCGATGAAGTGGGTTTGCTAAAGAATATTGATGCATTGAATGTCTCTGAGAATAATCTATCTGGCAATATTCCTGAAACCATTGGAGAATGCACAAGTTTGGAGTACCTTTATTTGCAGGGAAATTTCTTTCATGGAATCATACCCACCTCTTTGCCTTCACTAAAAGTTCTTCGACATTTAGACTTATCACGAAACCGCTTGTATGGATCCATTCCTAAAGGTCTCCAGAATATTTCTTTCTTAGAATACTTGAATGTATCTTTTAACCTGTTGGAGGGTGAGATACCAACTGAAGGTGTTTTTCGAAATCCAAGCCAGATAGCATTGACAAGAAATAATAAGCTTTGTGGAGGTGTTTCAGAGCTACATCTACCGCCATGCCCTGTCAAAGGTGAGAAACATGCAAAACATCACAATTTCAAGTTGATAGCAGCGACAATTAGCGTAGTTGCTTTTCTTCTCATATTGTCATCTATTCTCACTTTCTACCGGATGAGGAAAAAAAGCAAGAAACCATCTTCTAATTCACCAACAATTGACCAGTTGGCCAAGGTTTCATACCAAAACCTACACCGTGGAACTGATGGGTTTTCAACAAGAAACTTGATAGGATCTGGAAGTTTTGGCTCTGTGTACAAAGGAACTATTGAGCCAGAAGACAGAGTTGTTGCCATAAAGGTCCTAAACCTACAAAAGAAGGGAGTTCATAAGAGTTTTATTGCTGAATGTAATGCACTAAAAAATATTAGGCATCGAAATCTGATTAGGATATTAACATGTTGTTCTAGCACAGATTTCAAAGGTCAAGAATTTAAAGCTCTAGTTTTTGAGTATATGTCAAATAGAAGCTTAGAAAGTTGGTTGCATCCAGAAATAGAAGTTGCAGATCAACCTAGATCACTGAACTTAGAGGAAAGGTTAAATATTATTATTGATGTCGCTTCAGCATTTCATTATCTTCATTACGAATGTGAGCAAGCTGTCATTCATTGTGATTTGAAGCCTAGCAATGTTCTTCTTGATGATTGCATGGTAGCTCATGTGAGTGATTTTGGCCTAGCAAGATTGCTCCCAAGTGTTGGAGTTTCTCTGATGCAAAGTAGCACAATTGGAATTAAGGGGACTGTTGGTTATGCTCCTCCAGAGTATGGAATGGGTCTTGGGCTGTCAATTGAAGGTGATATGTATAGCTTCGGAATTCTGGTTTTAGAAATGTTAACTGGAAGAAGACCCACAAATGAAATGTTTAAAGATGGTCATACTCTCCACAATTATGTTAAAATTTCAATTTCAAATAATCTTGTGGAGATTGTGGACCCAACTATTCTCCCGAATGAATTAGAACGAGATACTGACAATAAGAACCTTGATCTTACACATCCTAATATGGAGAAATGTTTACTCTCTCTTTTTAGGATTGCACTTGCTTGTTCATTGGAATCACCAAAAGAAAGAATGAGTATAATTGATGTCACCAAGGAGCTTAATTTGATCAAAAGTTTCTTCCTTTCTGGGGTTTAG 3054 0.3766 MIHEFCSTCLHLFLLFNLNSLWFSPNTTASASGNETDHLALLKFKESISNDPYGILVSWNSSTHFCNWHGITCSPMYQRVTELNLQGYHLYGFISPQVGNLSSLRNLNLEDNSFYGKIPQELGLLLKLQQLSLTNNSLTGEIPTNLTSCTNLRGLQLRGNNLIGKIPIEMGSLQKLQQLSIGRNNLSGGIPPFIGNLSSLTGFSANYNNLEGDIPQELCSLKNLTKIAVGVNKLSGTFPSCLYNMSSLTIISVDGNQFNGSLPPYMFHTLPNLQVFLIGGNQISGPIPISVANASVLQLLDIQGNHFKGQVPSLGKLQDLKFLGSSLNNLGDNSTRDLEFLKSLTNCSKLYMLDISNNNFGGSLPNSLGNLSSQLSQLYLGGNQISGKIPMELGNLVSLILLSMGLNHFEGVIPSAFGKFQKLQYLELYGNNLSGNIPTFIGNLSQLFHLRLGHNILEGNIHPSIGNCQNLQYLDLSQNKLTGTIPLEVFSLSSLTNLLDLSQNSLSGNLPDEVGLLKNIDALNVSENNLSGNIPETIGECTSLEYLYLQGNFFHGIIPTSLPSLKVLRHLDLSRNRLYGSIPKGLQNISFLEYLNVSFNLLEGEIPTEGVFRNPSQIALTRNNKLCGGVSELHLPPCPVKGEKHAKHHNFKLIAATISVVAFLLILSSILTFYRMRKKSKKPSSNSPTIDQLAKVSYQNLHRGTDGFSTRNLIGSGSFGSVYKGTIEPEDRVVAIKVLNLQKKGVHKSFIAECNALKNIRHRNLIRILTCCSSTDFKGQEFKALVFEYMSNRSLESWLHPEIEVADQPRSLNLEERLNIIIDVASAFHYLHYECEQAVIHCDLKPSNVLLDDCMVAHVSDFGLARLLPSVGVSLMQSSTIGIKGTVGYAPPEYGMGLGLSIEGDMYSFGILVLEMLTGRRPTNEMFKDGHTLHNYVKISISNNLVEIVDPTILPNELERDTDNKNLDLTHPNMEKCLLSLFRIALACSLESPKERMSIIDVTKELNLIKSFFLSGV 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1712g00006 1017 SUPERFAMILY L domain-like 375 628 - -
Gabi1712g00006 1017 SMART serkin_6 708 1013 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1712g00006 1017 Gene3D Ribonuclease Inhibitor 267 342 IPR032675 -
Gabi1712g00006 1017 Gene3D Ribonuclease Inhibitor 198 266 IPR032675 -
Gabi1712g00006 1017 SUPERFAMILY L domain-like 34 330 - -
Gabi1712g00006 1017 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Gabi1712g00006 1017 FunFam Leucine-rich repeat receptor protein kinase EMS1 166 265 - -
Gabi1712g00006 1017 SMART LRR_sd22_2 173 199 - -
Gabi1712g00006 1017 SMART LRR_sd22_2 468 489 - -
Gabi1712g00006 1017 SMART LRR_sd22_2 420 446 - -
Gabi1712g00006 1017 SMART LRR_sd22_2 125 148 - -
Gabi1712g00006 1017 SMART LRR_sd22_2 565 591 - -
Gabi1712g00006 1017 FunFam LRR receptor-like serine/threonine-protein kinase EFR 336 644 - -
Gabi1712g00006 1017 PANTHER RECEPTOR-LIKE PROTEIN 55 362 1010 - -
Gabi1712g00006 1017 ProSitePatterns Protein kinases ATP-binding region signature. 714 737 IPR017441 GO:0005524
Gabi1712g00006 1017 Pfam Protein kinase domain 710 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1712g00006 1017 ProSitePatterns Serine/Threonine protein kinases active-site signature. 839 851 IPR008271 GO:0004672|GO:0006468
Gabi1712g00006 1017 ProSiteProfiles Protein kinase domain profile. 708 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1712g00006 1017 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 790 1016 - -
Gabi1712g00006 1017 Pfam Leucine Rich Repeat 352 371 IPR001611 GO:0005515
Gabi1712g00006 1017 FunFam LRR receptor-like serine/threonine-protein kinase EFR 678 789 - -
Gabi1712g00006 1017 SUPERFAMILY Protein kinase-like (PK-like) 681 1006 IPR011009 -
Gabi1712g00006 1017 Gene3D Ribonuclease Inhibitor 34 192 IPR032675 -
Gabi1712g00006 1017 Pfam Leucine rich repeat 543 602 IPR001611 GO:0005515
Gabi1712g00006 1017 Gene3D Transferase(Phosphotransferase) domain 1 790 1012 - -
Gabi1712g00006 1017 Gene3D Phosphorylase Kinase; domain 1 669 789 - -
Gabi1712g00006 1017 Gene3D Ribonuclease Inhibitor 343 639 IPR032675 -
Gabi1712g00006 1017 PRINTS Leucine-rich repeat signature 565 578 - -
Gabi1712g00006 1017 PRINTS Leucine-rich repeat signature 471 484 - -
Gabi1712g00006 1017 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 36 147 - -
Gabi1712g00006 1017 SMART LRR_typ_2 173 197 IPR003591 -
Gabi1712g00006 1017 SMART LRR_typ_2 396 419 IPR003591 -
Gabi1712g00006 1017 SMART LRR_typ_2 444 468 IPR003591 -
Gabi1712g00006 1017 SMART LRR_typ_2 469 492 IPR003591 -
Gabi1712g00006 1017 SMART LRR_typ_2 245 269 IPR003591 -
Gabi1712g00006 1017 SMART LRR_typ_2 125 149 IPR003591 -
Gabi1712g00006 1017 SMART LRR_typ_2 517 541 IPR003591 -
Gabi1712g00006 1017 SMART LRR_typ_2 589 614 IPR003591 -
Gabi1712g00006 1017 SMART LRR_typ_2 565 588 IPR003591 -
Gabi1712g00006 1017 ProSiteProfiles Leucine-rich repeat profile. 470 491 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1712g00006 Gabi-Chr1712 82685 89117 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1712g00006 34 1016 Receptor kinase-like Gene Family AT3G47570 45.829 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gabi1712g00006 Pkinase 1.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1712g00006 - - gmx:100792724 1387.47