Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1712g00004 ATGAAGCCCTTTTCTCTCATTATACATGAATTTGGTTCTACATGCCTTCCCCTATTTCTTCTGATAATTACTTTGAACTCACTCTGGTTTAGCCCAAACACAACTGCCTCTCAATCAGGAAACCAGACTGACCATTTGGCATTGCTTGAATTCAAGGAATCAATATCCAATGACCCATATGGTATCTTGGTCTCTTGGAATAGTTCTACCCATTTTTGCAAGTGGCATGGAATCATATGCAACCCCATGCATCAAAGAGTTACTCAGTTGCACTTACAAGGTTATCAACTGCATGGTTCTATATCTCCACAAGTTGGCAATCTCTCTTTTTTGATATATCTCAACCTCGGAAACAACAGCTTCTATGGAAAAATACCACAAGAATTGGGTCGATTGTTACAATTGCAAATACTTTCCCTCGTGAATAACTCGTTGACCGGGGAAATTCCTACAAACTTGACAGGTTGCTCTAGTCTCAAAGACTTATCCTTATATGATAACAATCTGATTGGCAAAATACCAATTCAAATTGGTTCTCTCCATAAGCTTGAGCTATTGTATGTTGGGGGAAATAATTTAACCGGAGAAATTCCACCATTCATAGGGAATCTTTCAGCACTAACCGATTTCTCGGTGCCTGAAAATAACTTAGAGGGACATATTCCAAGAGAAATCTGCCGCCTGAAGAACTTGACACTTGCATCAGTGCATATGAACAAATTGTCGGGTACATTTCCTTTTTGTCTTTACAATATGTCATCTCTTACTATAATCTCAGCTGCAGTAAATCAATTTAATGGCTCTCTGCCACCGAACATGTTCAGCACCCTTCCCAATCTCCTTGATTTTGGCATTTTTCAAAATCAATTTTCGGGTTCAATCCCAACTTCAATCACAAATGCATCTGTCCTTCAAATGTTTGATATTGGTCATAACCATTTCGTAGGACAAGTTCCAAGTCTAGGAAAACTACAAGATCTTTTGGTCCTATCTATAGAATTGAACAATCTAGGTAACAATTCAATTAAGGATTTGGAATTTTTAAAATCACTAAGCAATTGTATTAAGTTGCAAGAGTTATCTTTATCTTACAATAATTTTGGAGGTCGTTTGACAAATTCCTTGGGTAATTTATCCACCCAACTCAATCTACTGTATCTTGGGGGCAATCAAATGACAGGAAAAATTCCTGCAGAATTAGGAAATCTAATTAATTTAACTCTCTTGGGTATGGAAGCTAACCATTTTGAAGGTATTATTCCACCTGCTTTTGGAAATTTTCGGAAGATGCAAATATTAGAATTGAGTGGAAACAAGTTATCAGGAGATATACCAGCCTTCTTAGGCAACCTCAATCAGTTATATTTTTTGGGTCTGGCACAAAATTTGTTAGAAGGAACTATTCCTCCAAGTATAGGAAACTGTCAAAAGTTACAATACTTAGACCTTTCCCAAAACAATCTTAGAGGAACCATACCCTTAGAGGTTTTTAGTCTTTCCTCTTTAACAAATTTACTAGACTTGTCACACAACTCATTGAGTGGTAGTCTACCAGATGAAGTGGGCCAATTGAAAAATATTGATGTGCTAAATGTCTCTGAGAATCATCTATCTGGTAATATTCCTGGAACCATTGGAGAATGCTTAATCTTGGAGTACCTTTATTTGCAGGGGAATTCCTTCCATGGAATCATCCCATCCTCTTTGGCTGCACTAAAAGGTCTTCGACATTTAGACCTATCACGAAATCACTTGTCTGGATCAATTCCTGATGTTTTGCAGAATATTTCTTTCTTGGAATACTTAAATGTATCATTTAACATGTTGGATGGTGAGGTACCAACAAAAGGTGTCTTTCAAAATGCAAGCGAGTTAGTAGTGACTGGAAACAACAAACTTTGTGGAGGTGTTTCAGAGCTGCATCTACTGCCATGCCCTGTCAAAGGTGATAAACATGCAAAACACCACAATTTCAGGTTGATAGCAGCAATAATTAGTGTAGTTTCTTTTCTTCTCATACTGTCATTCATTCTCACTTTCTACTGGATGAGAAAAAGAAGCAGGAAACCATCTTCTGATTCACCAACAATTGATCAGTTGGCCAAGGTTTCATACCAAAACCTACACCGTGGAACCGATGGATTTTCAGTAAGAAACTTGATAGGATCTGGAAGTTTTGGCTCTGTGTACAAAGGAACTATCGAGCCAGAAGACAGAGTTGTTGCCATAAAGGTCCTAAACCTTCAAAAGAAGGGAGCTCACAAGAGTTTCATTGCTGAATGTAATGCACTCAAAAATATTAGGCATCGAAATCTGGTTAAGATTTTAACATGTTGTTCCAGCACAGACTACAAAGGTCAAGAATTTAAAGCTCTGGTTTTTGAGTACATGAAAAATGAAAGCTTAGAAAGTTGGTTGCATCCTGCAACAGAAATTGTAGATCAGCCTATATCACTAAGCCTTGAGCAAATGTTAAACATTATTACTGATGTTGCTTCAGCATTTCATTATCTTCACTACGAATGTGATCAAGCTGTCATTCATTGTGATTTAAAGCCCAGCAATATTCTTCTTGATGATTACATGGTAGCTCATGTGAGTGATTTTGGCTTAGCAAGATTGCTTTCAAGTATTGGAGTCTCTCTAATGCAAAGTAGCACAGTTGGAATAAAAGGGACAGTTGGTTATGCTCCTCCAGAGTATGGAATGAGTTCTGAGGTGTCAATTGAAGGTGACATGTATAGCTTCGGGATTCTAGTTTTAGAGATGTTAACTGGAAAAAGGCCCACAGATGAAATATTTAAAGATGATCATAATCTATATAATTATGTTCAAACTTCAATTCCAAATCACCTTTTGCAGATTGTGGACCCAATTATTCTCTGCAATGAGTTTGAGGAGGCTGCTAACAATAAGAACTTTGGCCTTACATATCCTAATGTAGAAAAATGTTTACTTTCACTTTTTAGGATTGCACTTGCTTGTTCAGTGGAATCACCAAAAGAAAGAATGAGTATGATTGATGTTACTAGAGAGCTTAATCTAATTAAAAGTTTCTTTCCTTGCGAGGCTTAG 3075 0.3714 MKPFSLIIHEFGSTCLPLFLLIITLNSLWFSPNTTASQSGNQTDHLALLEFKESISNDPYGILVSWNSSTHFCKWHGIICNPMHQRVTQLHLQGYQLHGSISPQVGNLSFLIYLNLGNNSFYGKIPQELGRLLQLQILSLVNNSLTGEIPTNLTGCSSLKDLSLYDNNLIGKIPIQIGSLHKLELLYVGGNNLTGEIPPFIGNLSALTDFSVPENNLEGHIPREICRLKNLTLASVHMNKLSGTFPFCLYNMSSLTIISAAVNQFNGSLPPNMFSTLPNLLDFGIFQNQFSGSIPTSITNASVLQMFDIGHNHFVGQVPSLGKLQDLLVLSIELNNLGNNSIKDLEFLKSLSNCIKLQELSLSYNNFGGRLTNSLGNLSTQLNLLYLGGNQMTGKIPAELGNLINLTLLGMEANHFEGIIPPAFGNFRKMQILELSGNKLSGDIPAFLGNLNQLYFLGLAQNLLEGTIPPSIGNCQKLQYLDLSQNNLRGTIPLEVFSLSSLTNLLDLSHNSLSGSLPDEVGQLKNIDVLNVSENHLSGNIPGTIGECLILEYLYLQGNSFHGIIPSSLAALKGLRHLDLSRNHLSGSIPDVLQNISFLEYLNVSFNMLDGEVPTKGVFQNASELVVTGNNKLCGGVSELHLLPCPVKGDKHAKHHNFRLIAAIISVVSFLLILSFILTFYWMRKRSRKPSSDSPTIDQLAKVSYQNLHRGTDGFSVRNLIGSGSFGSVYKGTIEPEDRVVAIKVLNLQKKGAHKSFIAECNALKNIRHRNLVKILTCCSSTDYKGQEFKALVFEYMKNESLESWLHPATEIVDQPISLSLEQMLNIITDVASAFHYLHYECDQAVIHCDLKPSNILLDDYMVAHVSDFGLARLLSSIGVSLMQSSTVGIKGTVGYAPPEYGMSSEVSIEGDMYSFGILVLEMLTGKRPTDEIFKDDHNLYNYVQTSIPNHLLQIVDPIILCNEFEEAANNKNFGLTYPNVEKCLLSLFRIALACSVESPKERMSMIDVTRELNLIKSFFPCEA 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1712g00004 1024 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 43 151 - -
Gabi1712g00004 1024 Gene3D Ribonuclease Inhibitor 41 332 IPR032675 -
Gabi1712g00004 1024 PANTHER LEUCINE RICH REPEAT KINASE 2 348 1017 - -
Gabi1712g00004 1024 ProSiteProfiles Protein kinase domain profile. 715 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1712g00004 1024 ProSitePatterns Protein kinases ATP-binding region signature. 721 744 IPR017441 GO:0005524
Gabi1712g00004 1024 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 797 1023 - -
Gabi1712g00004 1024 SUPERFAMILY L domain-like 42 337 - -
Gabi1712g00004 1024 SMART LRR_typ_2 132 156 IPR003591 -
Gabi1712g00004 1024 SMART LRR_typ_2 451 475 IPR003591 -
Gabi1712g00004 1024 SMART LRR_typ_2 572 595 IPR003591 -
Gabi1712g00004 1024 SMART LRR_typ_2 403 426 IPR003591 -
Gabi1712g00004 1024 SMART LRR_typ_2 180 204 IPR003591 -
Gabi1712g00004 1024 SMART LRR_typ_2 499 524 IPR003591 -
Gabi1712g00004 1024 Gene3D Ribonuclease Inhibitor 336 642 IPR032675 -
Gabi1712g00004 1024 Gene3D Phosphorylase Kinase; domain 1 696 796 - -
Gabi1712g00004 1024 PRINTS Leucine-rich repeat signature 478 491 - -
Gabi1712g00004 1024 PRINTS Leucine-rich repeat signature 572 585 - -
Gabi1712g00004 1024 FunFam LRR receptor-like serine/threonine-protein kinase EFR 343 651 - -
Gabi1712g00004 1024 Pfam Protein kinase domain 717 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1712g00004 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 846 858 IPR008271 GO:0004672|GO:0006468
Gabi1712g00004 1024 Gene3D Transferase(Phosphotransferase) domain 1 797 1019 - -
Gabi1712g00004 1024 FunFam Leucine-rich repeat receptor protein kinase EMS1 152 248 - -
Gabi1712g00004 1024 SMART serkin_6 715 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1712g00004 1024 SUPERFAMILY Protein kinase-like (PK-like) 688 1014 IPR011009 -
Gabi1712g00004 1024 Pfam Leucine rich repeat 551 609 IPR001611 GO:0005515
Gabi1712g00004 1024 SUPERFAMILY L domain-like 380 635 - -
Gabi1712g00004 1024 FunFam LRR receptor-like serine/threonine-protein kinase EFR 686 796 - -
Gabi1712g00004 1024 Pfam Leucine rich repeat N-terminal domain 42 81 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1712g00004 Gabi-Chr1712 63601 67171 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1712g00004 41 1020 Receptor kinase-like Gene Family AT3G47570 45.766 0.0 845
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gabi1712g00004 Pkinase 1.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1712g00004 - - gmx:100792724 1407.12