Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1712g00002 ATGGAGAACAACGAGGTACTAGAGGAGCTTCTCAACATCGAGGTTGAGATTCAAGATGTCCAAGATGAAATAAGGGCTTTAATTGAAAGGCAAGAGAAGTTGTATGAGAGAAAATCTGAGCTAAGTGCTATTCTGGAAGCATGTAAAGAATCTGGAACCCAGGTGAATAATGTAGCTTCAAGCACTGTAGAAAATTGGACTGGGCAATTTGAATGGGATTCTGAAGCAGATGATGTCAGGTTGAATATTTTTGGCATTTCTTCCTACCGTGCAAATCAAAGAGAGATAATTAATGCCATCTTGAGTGGAAGAGATGTATTGGTGATTATGGCTGCAGGTGGTGGCAAGAGCCTCTGCTACCAGCTTCCTGCTGTTCTTCGTGATGGAATTGCTCTAGTTGTTAGTCCTTTGCTTTCCTTAATTCAAGATCAGGTAATGGGATTGACTGCTTTGGGCATTCCAGCATATATGTTGACTTCAACAACAAGTAAGGAAAATGAGAAGTTCATATATAAGGCTTTGGAGAAGGGGGAGGGGTACCTCAAAGTATTGTATGTCACTCCTGAAAAGATATCGAAAAGCAAGAGGTTTATGTCAAAACTGGAAAAATGTCATCATGCTGGTCGTCTCTCTCTAATTTCAATTGACGAGGCACATTGCTGTAGTCAGTGGGGCCATGATTTTCGACCTGACTACAAGAACCTTGGTATTCTCAAGACTCAGTTCCCTAATGTTCCTATGGTTGCTTTGACTGCAACTGCCACTCAAAGGGTCCAAAATGATCTGATAGAGATGTTGCAAATTCCTAGATGTGTCAAATTTGTCAGCACAGTCAATAGGCCAAACTTATTTTATATGGTAAAGGAAAAGTCATCTGTTGGTAAGGTAGTTATTGACGAGATTGCTAAATTCATTCAAGAATCTTATCCAAATAATGAATCGGGGATTATTTATTGCTTCTCTAGGAAGGAATGTGAACAGGTTGCAAAGGAGTTAAGGGAGAGAGGAATTTCAGCTGATTATTATCATGCAGATATGGATGTAAATGCTAGGGAAAAAGTACATATGCGGTGGAGCAATAACAAGCTGCAGGTCATAGTTGGTACAGTAGCTTTTGGTATGGGAATCAACAAACCAGATGTCAGGTTTGTCATCCATCACAGCTTGAGCAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCTGGCCGAGATGGTCTTCCTTCTGAATGCCTACTGTACTTTAGACCTGGTGATGTTCCCCGGCAGAGCTCAATGGTCTTCTACGAAAATTCAGGACTGCAGAATCTCTATGACATAGTACGATATTGTCAGTCCAAAAGACAATGCCGACGAAGTGCCTTTTTCCGGCATTTTGCTGAGCCATTACAAGAGTGCAATGGGATGTGTGACAGCTGTGCATTCTCAAGTGAGGTGAAGGAAGTGGACGTCTCTCGTCATGCGAAACTGATGGTTTCTTTGTTGCAAGATATGCAAGCAAATGATCAGAGATCAACAATGTTGCAATTAGTCGATAAAATGAAAATAAAACAGAAGGAACTAGGTTCTGACTTGAAACGAGAGGAAATTGAGCAGCTCATCTTACACCTTTTACTGGAGCGTGTCTTGAAAGAAGAATTTCAGCATACACCTTATGCGACAAATGCATACATCGCTATAGGGCCCTTGGCCAAGCAAATATTGCAAGGGAAGAAGACTGTGAAGCTTGAGGTTTGTACTGAACAGAGAACTAAAGCTGGTGTAAGATCAGTGAAGCGCTGCCTTGGGTCCTCTGGGTTGGAGCTAAAGCTAGATGAGCTGAGAAAAGAACTGTCTTCCATTCATGGAGGAATACTCCCACACTCTGTCTTGTCCACTCAACAAATCAGCTTATTAAGTTCTCAAAAACCAAACTCACTGGAACAGTTGGAGAAGTTAATTGGAAGGTTGAAGACAGAGAAGTATGGAAATAGAATACTTGAGCAAATTGAAAAATATTCTGATTTCAAGCCGTCTGATGAACAAGTAACTGATGGTAGAGCTGCAAAGAAGTTGAAGACCAAGAAGACTCTTGTTCTTATTGAGAGTAGTGAAGATGAAGCGTGA 2109 0.4116 MENNEVLEELLNIEVEIQDVQDEIRALIERQEKLYERKSELSAILEACKESGTQVNNVASSTVENWTGQFEWDSEADDVRLNIFGISSYRANQREIINAILSGRDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQDQVMGLTALGIPAYMLTSTTSKENEKFIYKALEKGEGYLKVLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPMVALTATATQRVQNDLIEMLQIPRCVKFVSTVNRPNLFYMVKEKSSVGKVVIDEIAKFIQESYPNNESGIIYCFSRKECEQVAKELRERGISADYYHADMDVNAREKVHMRWSNNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPRQSSMVFYENSGLQNLYDIVRYCQSKRQCRRSAFFRHFAEPLQECNGMCDSCAFSSEVKEVDVSRHAKLMVSLLQDMQANDQRSTMLQLVDKMKIKQKELGSDLKREEIEQLILHLLLERVLKEEFQHTPYATNAYIAIGPLAKQILQGKKTVKLEVCTEQRTKAGVRSVKRCLGSSGLELKLDELRKELSSIHGGILPHSVLSTQQISLLSSQKPNSLEQLEKLIGRLKTEKYGNRILEQIEKYSDFKPSDEQVTDGRAAKKLKTKKTLVLIESSEDEA 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1712g00002 702 Gene3D - 280 476 IPR027417 -
Gabi1712g00002 702 FunFam ATP-dependent DNA helicase 46 279 - -
Gabi1712g00002 702 Gene3D - 46 279 IPR027417 -
Gabi1712g00002 702 Pfam Helicase conserved C-terminal domain 307 406 IPR001650 -
Gabi1712g00002 702 Pfam HRDC domain 604 663 IPR002121 GO:0003676
Gabi1712g00002 702 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Gabi1712g00002 702 CDD SF2_C_RecQ 280 416 - -
Gabi1712g00002 702 Coils Coil 3 37 - -
Gabi1712g00002 702 Gene3D HRDC domain 599 669 IPR044876 -
Gabi1712g00002 702 SMART helicmild6 326 407 IPR001650 -
Gabi1712g00002 702 NCBIfam RecQ family ATP-dependent DNA helicase 82 506 IPR004589 GO:0004386|GO:0006310
Gabi1712g00002 702 FunFam ATP-dependent DNA helicase 480 580 - -
Gabi1712g00002 702 CDD DEXHc_RecQ1 71 279 - -
Gabi1712g00002 702 FunFam ATP-dependent DNA helicase 280 476 - -
Gabi1712g00002 702 PANTHER DNA HELICASE RECQ FAMILY MEMBER 67 672 - -
Gabi1712g00002 702 SMART ultradead3 85 288 IPR014001 -
Gabi1712g00002 702 SMART RQC_2 484 581 IPR018982 GO:0006260|GO:0006281|GO:0043138
Gabi1712g00002 702 Gene3D - 480 580 IPR036388 -
Gabi1712g00002 702 Pfam RQC domain 481 585 IPR018982 GO:0006260|GO:0006281|GO:0043138
Gabi1712g00002 702 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 297 446 IPR001650 -
Gabi1712g00002 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 423 IPR027417 -
Gabi1712g00002 702 Pfam DEAD/DEAH box helicase 91 259 IPR011545 GO:0003676|GO:0005524
Gabi1712g00002 702 FunFam ATP-dependent DNA helicase 599 669 - -
Gabi1712g00002 702 Pfam RecQ zinc-binding 419 475 IPR032284 -
Gabi1712g00002 702 ProSiteProfiles HRDC domain profile. 595 674 IPR002121 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1712g00002 Gabi-Chr1712 1219 13255 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1712g00002 84 421 Eukaryotic Initiation Factors Gene Family AT3G19760 20.113 4.61e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1712g00002 K10899 - gmx:100817635 1209.9