Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1710g00004 ATGGATGAGTCATGGGGAAAATGGATTTCTGAAATGGAAATGGATGACCTGAACTCTCTCGAGGAAGAGTTCGAGGGAGTGAATTCACTACATCCAGAACCATCTTGGAATAGTCATTTTTCTGATTTAAATTTTACCATTGGCAATTCATCTTTGGAAGAAAACAATGATTTTGATAACCCTAGTCTTAAACAACTTACTTTATTAGAGAAACCTCTGTTCTCTTCCTCAATATCCTATACTACATCTTTTGAACACTCCACTGAAGTGCCAAATATTCCAAAGACAACATGCCATAATCATGATGCACAATCAAAGGAGACCCAAGAAGAACCAGAAAATAGAAACTCCAAGAAGGATAGTAGAAGCTCTGCTCAGATTCCATATCGCACATTGGCTGAGAGAAAAAGGAGAGAAAATCTCACCAGAATGTTCATAGCACTTTCAGCCAGTATTCCTGGATTGAAAAGGATGGACAAGGTTTCTATCCTTAACAACGCTATCGATCATGTGAAATATCTTCAGAAGCGGGTAAAAGATTTGGAGGAACAGAACAAGAAGAGAAAGACAAAATCCGTAGATAGACCTATCAAGACATTTCCAAATGTTAAAGCTAGCATTTCAGGAAAAGATGTACTCATCAGAGTTATGTGTCAGAAACAAAAGAACATTGTACCTAAGCTATTGGCCAAGCTTAAAGCTCATAATCTCTCCCTCGTTTGTAGCAATGCTATGTCATTTGGGAATTCTATTATGAACTTTACCAGCATTGCTCAGATATTGGACCACGAATTCAGCATGACAAAGGACGACTTAGTGAAAACTTTGAATGAGGAGCTGTTGGAGTGCTGTGACTTGCAACACTAA 867 0.3818 MDESWGKWISEMEMDDLNSLEEEFEGVNSLHPEPSWNSHFSDLNFTIGNSSLEENNDFDNPSLKQLTLLEKPLFSSSISYTTSFEHSTEVPNIPKTTCHNHDAQSKETQEEPENRNSKKDSRSSAQIPYRTLAERKRRENLTRMFIALSASIPGLKRMDKVSILNNAIDHVKYLQKRVKDLEEQNKKRKTKSVDRPIKTFPNVKASISGKDVLIRVMCQKQKNIVPKLLAKLKAHNLSLVCSNAMSFGNSIMNFTSIAQILDHEFSMTKDDLVKTLNEELLECCDLQH 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1710g00004 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
Gabi1710g00004 288 MobiDBLite consensus disorder prediction 88 133 - -
Gabi1710g00004 288 SMART finulus 131 180 IPR011598 GO:0046983
Gabi1710g00004 288 Pfam Helix-loop-helix DNA-binding domain 132 175 IPR011598 GO:0046983
Gabi1710g00004 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 188 IPR036638 GO:0046983
Gabi1710g00004 288 Coils Coil 164 191 - -
Gabi1710g00004 288 PANTHER BHLH TRANSCRIPTION FACTOR 17 281 - -
Gabi1710g00004 288 MobiDBLite consensus disorder prediction 100 120 - -
Gabi1710g00004 288 Gene3D - 129 195 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1710g00004 Gabi-Chr1710 65627 67648 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1710g00004 121 280 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.612 2.44e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi1710g00004 HLH 1.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1710g00004 - - gmx:100815351 290.041