Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1710g00003 ATGAAGTGTTTTTACTACTTCAAAGACAAATCCAGGAGTAGTAAACAAAGATCAGCACCTGAACTGAAAGAGCAAGAGAAACACCAGTTTTCAGGAGGTGAAAGGGTAACCAAGTCTTCATGTTCATCATCTGCCTCACCTCGTGGGATACCAGAAATGTATGAGGAGAAGGCTCATAATTTGAGGGTCTTCTCCTTAACAGAGCTCAAGCGTGCAACAAGTGATTTCAGCAGGCTTCTTAAGCTAGGAGAAGGTGGATTTGGAACTGTGTATAAAGGTTCAATAAAGCCTGTTGATGGGAATGGTTATCCTGTTTTGGTTGCCATCAAAAGGCTTAACAAGGATGCATTGCAGGGTCATAAGCAATGGTTGACTGAAGTTCAGTTTCTTGGTGTTGTGGAGCATCCAAATCTTGTCAAGCTTATTGGATACTGTGCTTTGGATGGTGAAAGAGGGATCCAGAGACTACTTGTGTATGAATACATGCCAAATCAAAGCTTAGAATTTCATCTTTTCAATAAAGCATATGATCCTCTGCCTTGGAAAACAAGACTTGAAATAGCACTTGGAGCAGCTCAAGGGTTATCCTATCTGCATGAAGAATTAGAAATTCAGGTGATATATCGAGATTTTAAATCTTCAAATGTATTACTGGATGAGAATTTTAAGCCAAAACTTTCTGATTTCGGACTTGCTAGGGAGGGACCAGTAGCTGGGGATACTCATGTTTCAACTGCTGTGATGGGGACAAATGGTTATGCTGCTCCAGATTACATTGAGACAGGGCATCTAACAGCCAAGAGTGATGTGTGGAGTTTTGGTGTGGTACTATATGAAATGCTTACTGGCAGGCGTTCATTGGAAAGAAACAGACCAAAAATGGAGCAGAAACTTGTAGAATGGGTGAAGCAATATCCTCCTGATAACAAAAGGTTTTGCTTGATAATGGATCCAAGACTTGAAGGACAATATCCCATTAATGGAGCAAGAAAACTAGCCAAGCTTGCGGATCATTGCCTGCGTAAGAGTGCAAAAGATAGGCCAACAATGAGTCAGGTGGTAGAGAGATTAAAGCAGATTATAATGCAAGCTTCTGATGAAGAATACCCTGCAGAAAAAAGTCTTGAGGTATCTGAGAATGATCCACTTGAGCCTGAAGAAAAGCCTAATCAATCTTCCTCTTCAGAATTATGGAAAAAGAGGATGGAACATCTTGCAAAACTTGGTGAGCATGTGGAGAGTGCAAGTAGAAGAAGATTTATGATCCTACAAAGAACCAATGTGCCGACATAG 1293 0.4076 MKCFYYFKDKSRSSKQRSAPELKEQEKHQFSGGERVTKSSCSSSASPRGIPEMYEEKAHNLRVFSLTELKRATSDFSRLLKLGEGGFGTVYKGSIKPVDGNGYPVLVAIKRLNKDALQGHKQWLTEVQFLGVVEHPNLVKLIGYCALDGERGIQRLLVYEYMPNQSLEFHLFNKAYDPLPWKTRLEIALGAAQGLSYLHEELEIQVIYRDFKSSNVLLDENFKPKLSDFGLAREGPVAGDTHVSTAVMGTNGYAAPDYIETGHLTAKSDVWSFGVVLYEMLTGRRSLERNRPKMEQKLVEWVKQYPPDNKRFCLIMDPRLEGQYPINGARKLAKLADHCLRKSAKDRPTMSQVVERLKQIIMQASDEEYPAEKSLEVSENDPLEPEEKPNQSSSSELWKKRMEHLAKLGEHVESASRRRFMILQRTNVPT 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1710g00003 430 Gene3D Transferase(Phosphotransferase) domain 1 162 381 - -
Gabi1710g00003 430 MobiDBLite consensus disorder prediction 369 386 - -
Gabi1710g00003 430 MobiDBLite consensus disorder prediction 1 33 - -
Gabi1710g00003 430 ProSitePatterns Protein kinases ATP-binding region signature. 82 110 IPR017441 GO:0005524
Gabi1710g00003 430 Pfam Protein tyrosine and serine/threonine kinase 81 357 IPR001245 GO:0004672|GO:0006468
Gabi1710g00003 430 MobiDBLite consensus disorder prediction 368 399 - -
Gabi1710g00003 430 CDD STKc_IRAK 82 360 - -
Gabi1710g00003 430 MobiDBLite consensus disorder prediction 1 49 - -
Gabi1710g00003 430 PANTHER OS01G0588500 PROTEIN-RELATED 26 360 - -
Gabi1710g00003 430 SUPERFAMILY Protein kinase-like (PK-like) 59 375 IPR011009 -
Gabi1710g00003 430 ProSiteProfiles Protein kinase domain profile. 76 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1710g00003 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Gabi1710g00003 430 Gene3D Phosphorylase Kinase; domain 1 50 161 - -
Gabi1710g00003 430 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 162 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1710g00003 Gabi-Chr1710 27083 33330 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1710g00003 62 398 Glycoside Hydrolase AT3G07070 46.243 3.99e-93 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi1710g00003 PK_Tyr_Ser-Thr 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1710g00003 - - gmx:100781858 740.339