Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi170g00001 ATGCCTTTGGAGGACTTCTACAACATGCTTAGTGCAACAAAGCTTAGAAGTAAGTTTTGGACTACATGGCAGCCACTGGACTCACCATGCTTGTTGGAGGATGTGGTTTTACCAGTGGAACTTGGTTTCTTTCTGATCTTGTTAGTCCAACTCATACGAACATGTATGAAGAACATGATCAGCAAGCAAAACAAGGTCTCAGATCTTGCCACAGAGAAGCATCCAACTGTAGTGAAACTTGGTTTTGCTTACAAATTCAGCTTAGTTTGCACCATTTTATTGTTTGCTGTTCATGCATTAATGCTATTACTAATGCTCAATCATGAGCCTCAATGTACCTCAAAACTTCAGGCTTTTACATCAGAGATAACTCAAGTGTTATCATGGGCAATTAGTGTAATAGCAATATGCATGGTATCAAAAACAAATACTCATTTCCCTTGGATTCTAAGGGCTTGGTGTCTTTGCAGTTTCCTTTTGTGCATTATCAGCACAGCCCTTCATTCCAATTTCAGTGTCAACAACCAGGGTCAGATTGGTATAAGAGAATATGCAGATTTCCTTGGTTTGTTTGCTTCAACATGCCTTTTGGTTATTTCAACAAGAGGGAAGACAGGCAATGTCTTAATTGCCACAAATGTTGAATCCGAACCACTTCTTGGAGAGAAAACTGAGAAACATTCAGAGCAACAAGGGGAATCTCCGTATGGAAAAGCTACTTTTCTTCAACTCATTACCTTCTCTTGGCTCAATCCTTTGTTTGCCGTAGGGTACAAGAAACCCCTTGAACAGAATGACATTCCTGATGTTGACATCAAGGACTCAGCTGAATTTCTGACCTACTCCCTTGATGAGAGCCTTAGACAAGTTAAGGAGAAAGATGGGACTACAAACCCATCTATCTACAAGGCTATCTATTTCTTTGCTAGGAAGAAAGCAGCAATCAATGCTCTTTTTGCAGTAGTAAGTGCTTCAGCATCATATGTTGGTCCATACTTGATCACTGACTTTGTGAATTTCCTTGGGGAAAAGGAAACCCGCGGGCTAAAAAGCGGTTACCTTCTGTCACTAGGCTTCTTATGTGCCAAAATGGTTGAGACCATAGCTCAGAGGCAATGGATTTTTGGTGCCAGGCAATTAGGCCTTCGCCTTAGAGCTGCATTGATTTCACATATATATAAGAAGGGCTTACATCTTTCAAATAGATCGCGCCAAAGTCATACAGGTGGTGAGATAATGAACTATATGAGTGTAGATGTGCAGAGAATCACAGATTTCATTTGGTATGTAAATGTAATATGGATGCTGCCTATACAAATTTCTTTAGCAGTTTTCATTTTGCATACAAATCTTGGAATAGGTTCAATGGCTGCATTAGCTGCTACAATGGCAGTTATGACTTTGAACATACCTCTTACAAAAATACAAAAAAGGTACCAATCCAAGATCATGGAGGCTAAGGACAACAGGATGAAAGCCACTTCAGAAGTTCTCAGAAACATGAGGACTTTGAAACTCCAAGCATGGGATAGTCAATTCTTTCAAAGGATAGAAGAATTGAGGAAAATTGAGTATAATTGGTTAATGAAGTCATTAAGACAAGGAGCATTTTCTGCTTTCATCTTTTGGGGATCACCAACATTCATTTCTGTGATAACCTTTTGGGCATGTATGTTCATGGGGATTGAACTGACAGCAGGAAGAGTCTTATCTGCATTTGCTACATTTAGAATGTTACAGGATCCTATATTTAGCCTTCCTGATTTACTCAATGTCATTGCTCAAGGAAAAGTTTCAGTTGATAGGATTGCTTCTTACCTCAAGGAGGAAGAAATCCAACATGATGTCATTGAATATGTTGCAAAAGACAAAACTGAATTTGATATAGTTATTGAAAAGGGGAGATTTAGTTGGGATCCTGAGTCAAGAAATCCAACCATTGATGTAAGTGAGTTAAAGGTTAAGAGAGGAATGAAGGTGGCAATTTGTGGATCTGTAGGTTCAGGAAAGTCTAGTCTTCTCTCAGGCATTTTGGGAGAAATATATAAACAGTCTGGGACAGTGAAGATTAGTGGAACAAAAGCTTATGTTCCACAATCAGCATGGATATTAACTGGAAATATCAAGGAGAATATTACCTTTGGAAAAGAATACAATAATGATAAGTATGAGAGAACTATTGAAGCATGTGCACTGAAAAAGGACTTTGAGCTATTTTCCTGTGGTGACCTTACAGATATTGGAGAAAGAGGGATTAATATGAGTGGTGGACAAAAGCAAAGGATACAGATAGCTAGAGCAGTTTACCAGGATGCTGATATCTATCTTCTTGATGACCCTTTCAGTGCTGTCGATGCTCATACTGGCACACACCTCTTTAAGGAGTGTCTTATGGGGATTCTCAAAGAGAAAACTATACTTTTTGTTACACACCAAGTTGAGTTTCTTCCAGCAGCAGACCTTATTCTGGTGATGCAAAATGGAAGGATTGTACAAGCTGGAAAGTTTGAAGAACTTCTAAAGCAAAATATAGGATTTGAACTTTTAGTTGGTGCTCATAGCAAAGCTCTAGAGTCAATTCTTATGGTTGAAAATTCAAGTAGATCAACTTTAAATACAATAGCTGAAGGTGAATCCAACACCAATTCCGATTCAAATGTTAAACTTGTGAGCATCCAGCATGACACAGTGCAAGATAATCCTGAAGAGAGCAAAGGAAATGATGGTAAATTGGTGCAAGATGAAGAAAGAGAAAGAGGGAGCATATCAAAAGAAGTTTACTGGTCTTATTTGACAATTGTTAAAGGGGGAATCCTGGTTCCAATCATAATCTTGGCACAGTCTTCATTCCAAATACTTCAGATTGCAAGTAACTATTGGATGGCTTGGGTTTGTCCTACAACAACTGATGCTAAGCCTTTATTTGAGATGAATTTCATACTAAATATATATATGCTACTCTCAATTGCTGGTGCATTTTGTGTTCTGGTGAGAGCCATGTTGGTGGCAAATGCTGGACTTCGGACAGCACAAACACTTTTCACCAAAATGTTGCATAATGTGCTCCGAGCCCCCATGGCATTTTTTGATTCAACCCCAACTGGTAGAATCTTGAACAGGACTTCTACAGATCAAAGTGTGGTAGACTTGGAAATGGCAAACAAAATAGGATGGTGTGCTTTCTCAATAATACAAATTCTAGGCACTATTGCAGTGATGTCCCAGGTGGCATGGCAAGTATTTGTCATCTTCATTCCAGTAACTGCAGTCTGCATATTTTATCAAAGATATTATACACCAACAGCAAGAGAACTGGCTCGCTTAGCACAGATACAAATTACTCCAATTCTCCACCATTTTTCAGAATCTTTAGCAGGAGCAGCATCAATTAGAGCTTTTGATCAAGAAAGCCGTTTCATGTACACAAATGTTGGCCTTATAGATAACTACTCAAGACCTTGGTTTCATAATGTGTCTGCAATGGAATGGCTTTCTTTCAGATTGAATTTACTTTCAAATTTTGTTTTTGCCTTCTCACTGGTCTTGCTGGTGAGCCTCCCTGAAGGAATAATTAATCCAAGCATCGCCGGGTTGGCAGTAACATATGGGATCAATCTGAATGTCTTGCAAGCATCAGTTATATGGAACATATGCAATGCAGAAAACAAGATGATATCAGTTGAAAGAATTCTTCAGTATACAAATATAACAAGTGAAGCACCTCTTGTGATTGAAGATTGCAGACCACCAAGCAACTGGCCAGAAATTGGAACAATCTGTTTCAAAAATTTGCAGATACGTTATGCTGAACATCTCCCTTCTGTGTTAAAAAACATTACTTGCACATTTCCTGGGAGGAAGAAAATTGGTGTTGTAGGACGCACTGGGAGTGGAAAATCAACCCTTATACAAGCTATTTTCAGGATTGTTGAACCAAGAGAGGGAAGCATTATAATTGACAATGTGGACATATGCAAGATAGGTCTTCATGACTTAAGGTCAAGGCTTAGCATTATTCCACAAGACCCTGCTTTGTTTGAAGGCACAGTTAGAGGAAACCTGGACCCACTGGAGCAATACTCTGACATTGAAGTGTGGGAGGCTCTAGATAAATGTCAGTTAGGTCACCTAGTGAGGGCCAAGGAAGAGAAGTTGAACTATCCAGTGGTTGAAAATGGTGATAACTGGAGTGTGGGCCAAAGGCAATTGTTTTGCCTTGGAAGAGCCCTTCTGAAGAGAAGCAGCATATTAGTACTAGATGAAGCAACAGCCTCTGTGGATTCTGCAACTGATGGAGTGTTACAGGAGATCATCAGTCAAGAGTTCAAAGATCGAACTGTTGTCACAATAGCTCATCGGATTCACACAGTTATTGATAGTGATTTGGTTTTGGTTCTAAGTGATGGGAGAGTTGCAGAGTATGATGAACCATCAAAGTTACTTGAAAGAGAAGATTCATTCTTCTTTAAACTTATAAGGGAGTATTCTAGGAGATCACATAGCTTCAACAACTTGGCAGTTCAACATATCCAAAGCAGGGAATAG 4545 0.3919 MPLEDFYNMLSATKLRSKFWTTWQPLDSPCLLEDVVLPVELGFFLILLVQLIRTCMKNMISKQNKVSDLATEKHPTVVKLGFAYKFSLVCTILLFAVHALMLLLMLNHEPQCTSKLQAFTSEITQVLSWAISVIAICMVSKTNTHFPWILRAWCLCSFLLCIISTALHSNFSVNNQGQIGIREYADFLGLFASTCLLVISTRGKTGNVLIATNVESEPLLGEKTEKHSEQQGESPYGKATFLQLITFSWLNPLFAVGYKKPLEQNDIPDVDIKDSAEFLTYSLDESLRQVKEKDGTTNPSIYKAIYFFARKKAAINALFAVVSASASYVGPYLITDFVNFLGEKETRGLKSGYLLSLGFLCAKMVETIAQRQWIFGARQLGLRLRAALISHIYKKGLHLSNRSRQSHTGGEIMNYMSVDVQRITDFIWYVNVIWMLPIQISLAVFILHTNLGIGSMAALAATMAVMTLNIPLTKIQKRYQSKIMEAKDNRMKATSEVLRNMRTLKLQAWDSQFFQRIEELRKIEYNWLMKSLRQGAFSAFIFWGSPTFISVITFWACMFMGIELTAGRVLSAFATFRMLQDPIFSLPDLLNVIAQGKVSVDRIASYLKEEEIQHDVIEYVAKDKTEFDIVIEKGRFSWDPESRNPTIDVSELKVKRGMKVAICGSVGSGKSSLLSGILGEIYKQSGTVKISGTKAYVPQSAWILTGNIKENITFGKEYNNDKYERTIEACALKKDFELFSCGDLTDIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTHLFKECLMGILKEKTILFVTHQVEFLPAADLILVMQNGRIVQAGKFEELLKQNIGFELLVGAHSKALESILMVENSSRSTLNTIAEGESNTNSDSNVKLVSIQHDTVQDNPEESKGNDGKLVQDEERERGSISKEVYWSYLTIVKGGILVPIIILAQSSFQILQIASNYWMAWVCPTTTDAKPLFEMNFILNIYMLLSIAGAFCVLVRAMLVANAGLRTAQTLFTKMLHNVLRAPMAFFDSTPTGRILNRTSTDQSVVDLEMANKIGWCAFSIIQILGTIAVMSQVAWQVFVIFIPVTAVCIFYQRYYTPTARELARLAQIQITPILHHFSESLAGAASIRAFDQESRFMYTNVGLIDNYSRPWFHNVSAMEWLSFRLNLLSNFVFAFSLVLLVSLPEGIINPSIAGLAVTYGINLNVLQASVIWNICNAENKMISVERILQYTNITSEAPLVIEDCRPPSNWPEIGTICFKNLQIRYAEHLPSVLKNITCTFPGRKKIGVVGRTGSGKSTLIQAIFRIVEPREGSIIIDNVDICKIGLHDLRSRLSIIPQDPALFEGTVRGNLDPLEQYSDIEVWEALDKCQLGHLVRAKEEKLNYPVVENGDNWSVGQRQLFCLGRALLKRSSILVLDEATASVDSATDGVLQEIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRVAEYDEPSKLLEREDSFFFKLIREYSRRSHSFNNLAVQHIQSRE 1514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi170g00001 1514 CDD ABC_6TM_ABCC_D1 315 603 IPR044746 GO:0140359
Gabi170g00001 1514 Gene3D - 1242 1494 IPR027417 -
Gabi170g00001 1514 SMART AAA_5 656 829 IPR003593 GO:0016887
Gabi170g00001 1514 SMART AAA_5 1285 1477 IPR003593 GO:0016887
Gabi170g00001 1514 CDD ABCC_MRP_domain2 1257 1477 - -
Gabi170g00001 1514 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 238 1495 - -
Gabi170g00001 1514 SUPERFAMILY ABC transporter transmembrane region 310 611 IPR036640 GO:0005524|GO:0016020
Gabi170g00001 1514 Pfam ABC transporter 651 781 IPR003439 GO:0005524
Gabi170g00001 1514 FunFam ABC transporter C family member 10 297 611 - -
Gabi170g00001 1514 FunFam ABC transporter C family member 5 614 861 - -
Gabi170g00001 1514 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1261 1493 IPR003439 GO:0005524
Gabi170g00001 1514 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 314 595 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi170g00001 1514 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 942 1222 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi170g00001 1514 CDD ABCC_MRP_domain1 629 829 - -
Gabi170g00001 1514 ProSitePatterns ABC transporters family signature. 754 768 IPR017871 GO:0005524|GO:0016887
Gabi170g00001 1514 MobiDBLite consensus disorder prediction 898 916 - -
Gabi170g00001 1514 Gene3D ABC transporter type 1, transmembrane domain 903 1240 IPR036640 GO:0005524|GO:0016020
Gabi170g00001 1514 Gene3D ABC transporter type 1, transmembrane domain 285 612 IPR036640 GO:0005524|GO:0016020
Gabi170g00001 1514 FunFam ABC transporter C family member 3 1242 1494 - -
Gabi170g00001 1514 FunFam ABC transporter C family member 5 903 1240 - -
Gabi170g00001 1514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 624 844 IPR027417 -
Gabi170g00001 1514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1252 1488 IPR027417 -
Gabi170g00001 1514 MobiDBLite consensus disorder prediction 897 916 - -
Gabi170g00001 1514 SUPERFAMILY ABC transporter transmembrane region 940 1241 IPR036640 GO:0005524|GO:0016020
Gabi170g00001 1514 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 629 852 IPR003439 GO:0005524
Gabi170g00001 1514 Gene3D - 624 855 IPR027417 -
Gabi170g00001 1514 Coils Coil 476 496 - -
Gabi170g00001 1514 CDD ABC_6TM_ABCC_D2 940 1234 IPR044726 GO:0140359
Gabi170g00001 1514 Pfam ABC transporter transmembrane region 315 578 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi170g00001 1514 Pfam ABC transporter transmembrane region 946 1186 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi170g00001 1514 Pfam ABC transporter 1276 1424 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi170g00001 Gabi-Chr170 71329 81769 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi170g00001 652 843 Calmodulin-binding Proteins AT2G36910 33.654 1.54e-21 100