Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1703g00004 ATGGCCTTAGATCAATATTTTGAGGGTGCTGTGCCCCAAATAGATTCCTTCGAAGAAAAATCATCTCTGGAAATGTGGAAATGTGCCAGTGAAGATGATATTGCAGATTTTGATAGAAATGCCTCTAGTGACTTTGACTGCAACATCTGCCTGGAGTGTGTGCAAGATCCAGTGGTAACTCTTTGTGGTCATCTTTATTGCTGGCCCTGCATATACAAATGGCTTAATTCCCATAGTGTCTTTTCTGAAAATGAAGAGAAAGAGAAGCAACAATGTCCAGTATGCAAATCAGAAATTTCACAGTCATCCCTTGTTCCACTATATGGCCGTGGCCAAACCACATTACCTTCTAAAGGCAAGGCTCGCCAAGTAGGGATTGTCATACCAAGAAGACCCCTTGGTCCTTCATGGGTGGCTCACTCACCAAGATCATTTGATACTGCAAATGTTTCCCAACCCACTTCTCAAGTTTATCATCCCCATTATCCTAACCGTCCTCAACAATTCAACTCAATTCCAGGCAGTAACACTTCACCAATGCTTAACACAGGTGGTTCATTAACAAACGCATTTGATACAACATATGGAGTCTTTGGTGAGATGATATATGCAAGAGTCTTTGGAAACCAGGTGACAAACATATACACACACCCGAATTCATATGATCTTTCCGGGATCAATAATCCAAGGATCAGAAGGCACTTAATGCAAGCTGATAAGTCACTCGGTAGAATCAGTTTTTTCCTCCTTTGTTGTACAGTTCTGTGTCTTCTCTTATTCTGA 783 0.4138 MALDQYFEGAVPQIDSFEEKSSLEMWKCASEDDIADFDRNASSDFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNSHSVFSENEEKEKQQCPVCKSEISQSSLVPLYGRGQTTLPSKGKARQVGIVIPRRPLGPSWVAHSPRSFDTANVSQPTSQVYHPHYPNRPQQFNSIPGSNTSPMLNTGGSLTNAFDTTYGVFGEMIYARVFGNQVTNIYTHPNSYDLSGINNPRIRRHLMQADKSLGRISFFLLCCTVLCLLLF 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1703g00004 260 Pfam Zinc finger, C3HC4 type (RING finger) 47 95 IPR018957 GO:0046872
Gabi1703g00004 260 ProSiteProfiles Zinc finger RING-type profile. 47 96 IPR001841 -
Gabi1703g00004 260 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 257 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gabi1703g00004 260 CDD RING-HC_AtRMA-like 45 97 - -
Gabi1703g00004 260 ProSitePatterns Zinc finger RING-type signature. 62 71 IPR017907 -
Gabi1703g00004 260 SUPERFAMILY RING/U-box 41 108 - -
Gabi1703g00004 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 122 IPR013083 -
Gabi1703g00004 260 SMART ring_2 47 95 IPR001841 -
Gabi1703g00004 260 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 30 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1703g00004 Gabi-Chr1703 33128 36206 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1703g00004 31 260 C3H Transcription Factor Family AT4G28270 38.298 4.06e-44 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1703g00004 K10666 - gmx:100785491 392.889