Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1702g00001 ATGGGACAAGAAACCAGAAGGCTCTCAGATGAGTACGATGTTTCAGACATCCTAGGAAGAGGTGGATTCTCTGTTGTGAGAAAAGGGACCAAAAAATCAAGCAGTGAGAAAACCCATGTAGCAATCAAAACACTTAGAAGGTTAGGTTCCTCAAATCCTTCTGGCTTACCAAGAACAAAGGGTAGTGAGAATACCACAGCATCTGTCATGGGGTTCCCCACATGGAGACAAGTTTCAGTCTCAGATGCCTTACTCACCAATGAGATTCTAGTCATGAGAAGGATAGTGGAAAATGTTTCACCACATCCAAATGTGATTGACCTCTATGATGTGTATGAGGACTCAAATGGGGTTCATCTTGTGCTGGAGCTATGTTCTGGTGGGGAATTATTTGATAGAATTGTTGCACAAGATAGGTACTCAGAAACTGAAGCTGCTGGAGTGGTTCGCCAGATTGCAGCAGGATTAGAAGCTATTCACAGAGCTAACATTGTCCATAGAGACTTGAAGCCTGAGAATTGCTTATTCTTAGACATCAGGAAGGAGTCTCCTCTTAAGATCATGGACTTTGGGTTGAGTTCTGTTGAAGAATTTACTGACCCAGTTGTTGGTTTGTTTGGATCTATTGATTATGTTTCACCAGAGGCTCTTTCTCAAGGAAAGATAACTACTAAGAGTGACATGTGGTCTTTGGGAGTAATCCTATATATCTTACTCTCTGGGTATCCACCTTTCATTGCTCAGTCTAATCGCCAAAAACAACAAATGATAATGAATGGGAATTTCAGCTTCTATGAGAAAACTTGGAAGGGCATTTCCAATTCAGCGAAGCAATTGATTTCAAGTCTTCTGACTGTTGATCCTAGTAGGAGACCTAGTGCTCAAGAGCTTCTGAGTCATCCATGGGTCGTAGGTGACAAAGCCAAGGATGATGCAATGGACCCTGAGATTGTCTCAAGGTTGCAGAGCTTCAATGCAAGACGCAAACTACGTGCAGCTGCAATTGCTAGCGTTTGGAGCACCACAATCTTCCTGAGAACAAAAAAACTGAGATCATTGGTAGGAACATACGATCTCACAGAAGCGGAAATTGAAAATCTCAGGATACATTTCAAGAAAATATGTGCAAATGGAGACAATGCCACTCTCTCTCAGTTTGAAGAGGTGCTGAAAGCAATAAATATGCCATCATTGATCCCTCTAGCACCACGTATATTTGACTTGTTTGACAACAACCGTGATGGAACTGTTGACATGCGAGAGATTCTATGTGGATTTTCTAGTTTAAAAAATTCCAAAGGTGATGATGCTCTTCGTTTGTGCTTCCAGATGTATGACACGGATCGATCTGGTTGCATCACCAAGGAAGAAGTAGCATCCATGCTCAGAGCTTTGCCAGATGACTGTCTTCCAGTTGATATCACTGAACCAGGAAAATTGGATGAGATATTTGACAGAATGGATGCCAACAGTGATGGAAAAGTTACCTTTGATGAATTCAAAGCTGCTATGCAGAGAGATAGCTCTCTCCAAGACATGGTCCTCTCTTCTCTTCGCCCACAATAG 1566 0.4208 MGQETRRLSDEYDVSDILGRGGFSVVRKGTKKSSSEKTHVAIKTLRRLGSSNPSGLPRTKGSENTTASVMGFPTWRQVSVSDALLTNEILVMRRIVENVSPHPNVIDLYDVYEDSNGVHLVLELCSGGELFDRIVAQDRYSETEAAGVVRQIAAGLEAIHRANIVHRDLKPENCLFLDIRKESPLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITTKSDMWSLGVILYILLSGYPPFIAQSNRQKQQMIMNGNFSFYEKTWKGISNSAKQLISSLLTVDPSRRPSAQELLSHPWVVGDKAKDDAMDPEIVSRLQSFNARRKLRAAAIASVWSTTIFLRTKKLRSLVGTYDLTEAEIENLRIHFKKICANGDNATLSQFEEVLKAINMPSLIPLAPRIFDLFDNNRDGTVDMREILCGFSSLKNSKGDDALRLCFQMYDTDRSGCITKEEVASMLRALPDDCLPVDITEPGKLDEIFDRMDANSDGKVTFDEFKAAMQRDSSLQDMVLSSLRPQ 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1702g00001 521 ProSiteProfiles Protein kinase domain profile. 12 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1702g00001 521 CDD EFh 404 463 IPR002048 GO:0005509
Gabi1702g00001 521 Gene3D - 347 515 - -
Gabi1702g00001 521 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 130 320 - -
Gabi1702g00001 521 ProSiteProfiles EF-hand calcium-binding domain profile. 433 468 IPR002048 GO:0005509
Gabi1702g00001 521 CDD EFh 438 505 IPR002048 GO:0005509
Gabi1702g00001 521 PANTHER SERINE/THREONINE-PROTEIN KINASE 7 484 - -
Gabi1702g00001 521 CDD STKc_CAMK 12 302 - -
Gabi1702g00001 521 FunFam calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 346 515 - -
Gabi1702g00001 521 Gene3D Phosphorylase Kinase; domain 1 3 56 - -
Gabi1702g00001 521 SUPERFAMILY EF-hand 347 513 IPR011992 -
Gabi1702g00001 521 Pfam EF hand 406 421 IPR002048 GO:0005509
Gabi1702g00001 521 ProSiteProfiles EF-hand calcium-binding domain profile. 397 432 IPR002048 GO:0005509
Gabi1702g00001 521 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 3 126 - -
Gabi1702g00001 521 Gene3D Transferase(Phosphotransferase) domain 1 131 346 - -
Gabi1702g00001 521 SMART efh_1 437 465 IPR002048 GO:0005509
Gabi1702g00001 521 SMART efh_1 479 507 IPR002048 GO:0005509
Gabi1702g00001 521 SMART efh_1 401 429 IPR002048 GO:0005509
Gabi1702g00001 521 Pfam EF-hand domain pair 436 505 IPR002048 GO:0005509
Gabi1702g00001 521 ProSiteProfiles EF-hand calcium-binding domain profile. 475 510 IPR002048 GO:0005509
Gabi1702g00001 521 ProSitePatterns EF-hand calcium-binding domain. 488 500 IPR018247 -
Gabi1702g00001 521 PRINTS Recoverin family signature 359 378 - -
Gabi1702g00001 521 PRINTS Recoverin family signature 495 515 - -
Gabi1702g00001 521 PRINTS Recoverin family signature 405 426 - -
Gabi1702g00001 521 PRINTS Recoverin family signature 429 448 - -
Gabi1702g00001 521 Gene3D Phosphorylase Kinase; domain 1 73 130 - -
Gabi1702g00001 521 SMART serkin_6 12 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1702g00001 521 MobiDBLite consensus disorder prediction 48 67 - -
Gabi1702g00001 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Gabi1702g00001 521 SUPERFAMILY Protein kinase-like (PK-like) 5 321 IPR011009 -
Gabi1702g00001 521 Pfam Protein kinase domain 86 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1702g00001 521 ProSitePatterns EF-hand calcium-binding domain. 446 458 IPR018247 -
Gabi1702g00001 521 ProSitePatterns Protein kinases ATP-binding region signature. 18 43 IPR017441 GO:0005524
Gabi1702g00001 521 ProSitePatterns EF-hand calcium-binding domain. 410 422 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1702g00001 Gabi-Chr1702 8141 12271 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1702g00001 84 508 EF-hand Containing Proteins AT3G10660 37.300 1.36e-78 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Gabi1702g00001 Pkinase 7.5e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1702g00001 K13412 - gmx:732616 949.888