Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi169g00004 ATGGCTCGCACGCTGAGAATCCTCCAATCCACAAACAACGCCACTACGGCGCCGCCGCCGGAGGCCGTGTCGGTGGAATCAGACTTCGTCGTGATCCTAGCGGCCCTTCTCTGCGCCCTCATATGTGTTGTGGGCCTCATAGCCATCGCCCGCTGCGCCTGGCTCCGCCGTGGCCCCGTCGCCGTGGCCGGAAACTCGCCGAGGCAGACCCTCGCCAACAAGGGTCTCAAGAAAAAAGTACTTGACTCGCTGCCCAAGTTCAACTACGTCGACGGTGAGGGCAACCCCAACAAGTTGGTGGCCTCGTCGGAGTGCGCGATTTGCCTGTCGGAGTTCGCCGCCGGCGACGAGGTCCGGGTGCTGCCGCAGTGCGGCCATGGGTTCCACGTGGCATGCATTGACAAGTGGCTTGAGTCCCACTCCTCGTGCCCCTCCTGCCGCGCCCTCTTCGCGGTGCCCAGGTGCCAGAAATGTGGCCAGTACCCGGCGGTGATCGGCGGAGCCACCGCCGTCGCCTTTGCCGGTGGAAGGGAGTTAAAGTTCTTGAATGGCGACAATGCCAATGCCGCTACTAATGCTAATTGTAATATTAGCCACAGTGTTAATAACGGTTTCTTGCCTTGA 624 0.6106 MARTLRILQSTNNATTAPPPEAVSVESDFVVILAALLCALICVVGLIAIARCAWLRRGPVAVAGNSPRQTLANKGLKKKVLDSLPKFNYVDGEGNPNKLVASSECAICLSEFAAGDEVRVLPQCGHGFHVACIDKWLESHSSCPSCRALFAVPRCQKCGQYPAVIGGATAVAFAGGRELKFLNGDNANAATNANCNISHSVNNGFLP 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi169g00004 207 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Gabi169g00004 207 CDD RING-H2_EL5-like 104 147 - -
Gabi169g00004 207 SMART ring_2 105 146 IPR001841 -
Gabi169g00004 207 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 20 159 - -
Gabi169g00004 207 FunFam E3 ubiquitin-protein ligase ATL6 65 153 - -
Gabi169g00004 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 151 IPR013083 -
Gabi169g00004 207 Pfam Ring finger domain 104 147 IPR001841 -
Gabi169g00004 207 SUPERFAMILY RING/U-box 81 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi169g00004 Gabi-Chr169 132073 132931 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi169g00004 1 158 C3H Transcription Factor Family AT1G76410 59.756 1.04e-57 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi169g00004 - - gmx:100787383 261.922