Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1698g00007 ATGAATTTTTACGCCAAAACTTGCAACGCAGTTCCAAACCTTCTGCTTAGGCTTCCTCTCATAATCTCGCTTCTCCTATTCAAGTGCCTTATAGGAGTTCAGGCTGCCAACAGTTCCCAAAATTCAAGTGTTGGTGTGGTCATTGATATCAATTCTGAGACGGGAAAACAGCAGAGAAGAGCCATGGAAGTTGCAGCTCAAAGTTTCAATGATTATTCCAAGACTCAAAACATTATCCTTTTCTTCCGTGACTCTGGTAGAAACCCATTACGAGCAGCTTCAGCTGCTGAAGATTTGATTAATAAGAAGAAAGTTAAAGTCATTATTGGCATGGAGACATGGCAGGAAGCAGCTCTAGTTGCTGACCTTGGAACTAAAGCTCAAGTACCAATTATTTCATTTTCTTCTCCCTCCGTAGTCCCTCCATTAATGCAACTTCGTTGGCCTTTCTTGATTCAAATGGCTAAAACTCAAGATGCACACATGAACTGCATAGCAGATATTATCCATGCCTACAACTGGCAAAATGTAATAGCTATATATGAAGACAACCCTTATAGTGGTGATTCTGGAATGTTAAGCCTCTTTTCTGAGGCTCTCCAAAAGGTCAACGCGCAGATTGAGTACCGATTAGTTCTTCCATCATTCACTTCTTTATCTGATCCAAAAGGGGTTGTTCTCGACGAATTGCTTAAGCTATTGCCACTTAAATCTCGTGTTTTTATTGTACTTCAAGCATCGTTCCCTATGGTGACTCATTTGTTCAGAGAAGCTAAGAAAATTGATGGATTCTTGGGGAAAGAGTCAGCTTGGATAATCAATGAGGAGATTACAAGTATGTTGGATTCTGTCAATAAATCTATTTTATCTTCTATGGAAGGTACTTTGGGAATCAAAACGTACTATTCTACAAGCTCTAGTGCTTATACTAAGTTGCAGGAAAATTTCCTAACTGAGCATACAAAAACAGTTGGGTCCAAACCAGGATTAAATGCACTACGAGCTTATGATAGCATTACAGTCATCACAAGGGCCTTGGAGAAAATGAATACCAACTCTAGTAACTCAATGATGTTTTTGGAGGAAATGTTATCTAGCAATTTCAATGGTTTAAGTGGTCATATAAGGTTCAAAGAAAGTCATCTATCCTACACTCCAATAATAAGGGTCATAAACGTGGTTAATAAGAAATACAATGAATTGGACTTTTGGACACCAAAGTTGAAGTTCGCTAGATCTCTTAAAATATTGAAAGACAGAGAGAAAAGAGGTGATAATGCAACAAAAGGCTTAACTGGCCCAGTGGTCTGGCCAGGAGGCCTAACTTCTGTTGATCCTAAAGGATGGAAAATACCTACAGATACAAACCCTTTAAAAGTTGCACTTCCCATGAACCCTGCTTTTGATAATTTTTTGAAGATAGACCCCCAAAATCAATATACTGGTTTCTGTATTGATCTTTTCCACAAGGTACGAGACATTCTGATTGACAAGTATTCTGGTCTGCCCTATGAATTTCACCCCCGCAATGAATCGTATGATACACTTCTACTGCATGTCATAAATGAGTCCTATGATGCTATTGTAGGAGATGTCACAATACTTGCCAATCGATCAAAGGATGTGTGGTTCACTCAACCATACACTGAGTCAGGCTTATCACTCATCCTTCCAGCAGAGACTGAAGGATCAGCATGGTTGTTTATGAAACCATTTAGCTTGGAGATGTGGATAGCAACTATTGCCATTCTCATCTACACAATGTTTATCATCTGGTTCCTGGAGCATCACTTGAATCCAGACTTTGGTGGACCGTTGAAAAATCAGATCAGCACCACACTGTGGTTTGCTTTTTCTTCTCTATTTTTCGCTCATAAGGAGAACATAAACAGCAACACTGCACGAATAGTAGTTGGTGGATGGTTATTTCTTGTGTTTGTCCTAACCTCAAGCTACACGGCCAGCCTTTCTTCAATGCTTACTGTACAACGGTTGAAGACTGGAAGAGATATTGAGTGGCTAAAGCAAAACAACTTACCAATTGGTTGTGATAATAGCAGTACCTTTATAAAGAGCTACTTGGTGAATGTGTATGATGTTAAACCGCATAATGTCATAGACGTTGATGGAGAACATGACATTGTGGATAAATTCAAGAGCAAAAGAATTTCTGCTCTCTTTCTTGAGAGCCCATATGTGAAGGTTTTCTTGAATAAGTACTGCAATGATTACACTGCAACTACAGCTGCCTATAAATTTGGAGGGCTGGGCTTTGTATTCCAAAAAGGATCTCCAATGGCAAAAGATTTCTCTGAAGGCATTTTAACACTAGCTGAAGATGGATCACTAAAAACTTTAGAAGATCTATGGTTGACCCCTTCCAATGAATGCTCAAAGAACAAAACTTCTCCAGAAACTGAGAGCCTGACCCTCACCAATTTTTGGGGTCTCTATATGATGTGTGCTGCCACTTCCACTTTCTGCTTAGTACTGGCCTTACGGACGAAGTATCTGCAAAACCATAACCATTACCAACATGAAGAGGAAGCTCAACGTCAAGGCAATGCAACCACTGATGATAATAGTGTTTGGAAGAAGGCTTTTAGAATCGGTACAGAATTTTACAATGGGAATGTGAGAACTTTTGATAAAGCTGCAACTTTTGGTGGAAGGGGAACACATGCTGTACGTCGTCGGAATTCCTCAAGATGGGAGAGTATAAGGACTTCTGATGATCTAAGCAATCCACAGCGCTCCCAATCAGCTGTCATAGAAATGATGTAG 2784 0.3976 MNFYAKTCNAVPNLLLRLPLIISLLLFKCLIGVQAANSSQNSSVGVVIDINSETGKQQRRAMEVAAQSFNDYSKTQNIILFFRDSGRNPLRAASAAEDLINKKKVKVIIGMETWQEAALVADLGTKAQVPIISFSSPSVVPPLMQLRWPFLIQMAKTQDAHMNCIADIIHAYNWQNVIAIYEDNPYSGDSGMLSLFSEALQKVNAQIEYRLVLPSFTSLSDPKGVVLDELLKLLPLKSRVFIVLQASFPMVTHLFREAKKIDGFLGKESAWIINEEITSMLDSVNKSILSSMEGTLGIKTYYSTSSSAYTKLQENFLTEHTKTVGSKPGLNALRAYDSITVITRALEKMNTNSSNSMMFLEEMLSSNFNGLSGHIRFKESHLSYTPIIRVINVVNKKYNELDFWTPKLKFARSLKILKDREKRGDNATKGLTGPVVWPGGLTSVDPKGWKIPTDTNPLKVALPMNPAFDNFLKIDPQNQYTGFCIDLFHKVRDILIDKYSGLPYEFHPRNESYDTLLLHVINESYDAIVGDVTILANRSKDVWFTQPYTESGLSLILPAETEGSAWLFMKPFSLEMWIATIAILIYTMFIIWFLEHHLNPDFGGPLKNQISTTLWFAFSSLFFAHKENINSNTARIVVGGWLFLVFVLTSSYTASLSSMLTVQRLKTGRDIEWLKQNNLPIGCDNSSTFIKSYLVNVYDVKPHNVIDVDGEHDIVDKFKSKRISALFLESPYVKVFLNKYCNDYTATTAAYKFGGLGFVFQKGSPMAKDFSEGILTLAEDGSLKTLEDLWLTPSNECSKNKTSPETESLTLTNFWGLYMMCAATSTFCLVLALRTKYLQNHNHYQHEEEAQRQGNATTDDNSVWKKAFRIGTEFYNGNVRTFDKAATFGGRGTHAVRRRNSSRWESIRTSDDLSNPQRSQSAVIEMM 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1698g00007 927 MobiDBLite consensus disorder prediction 892 927 - -
Gabi1698g00007 927 SUPERFAMILY Periplasmic binding protein-like II 435 792 - -
Gabi1698g00007 927 SMART GluR_14 457 793 IPR001320 GO:0015276|GO:0016020
Gabi1698g00007 927 Pfam Bacterial extracellular solute-binding proteins, family 3 474 792 IPR001638 -
Gabi1698g00007 927 MobiDBLite consensus disorder prediction 907 927 - -
Gabi1698g00007 927 Pfam Receptor family ligand binding region 59 381 IPR001828 -
Gabi1698g00007 927 SUPERFAMILY Periplasmic binding protein-like I 43 448 IPR028082 -
Gabi1698g00007 927 Gene3D - 453 565 - -
Gabi1698g00007 927 FunFam Glutamate receptor 565 695 - -
Gabi1698g00007 927 PIRSF IGluLR_plant 13 925 IPR017103 -
Gabi1698g00007 927 Gene3D - 566 698 - -
Gabi1698g00007 927 FunFam Glutamate receptor 161 326 - -
Gabi1698g00007 927 CDD PBP1_GABAb_receptor_plant 43 414 IPR044440 -
Gabi1698g00007 927 Gene3D - 52 385 - -
Gabi1698g00007 927 Pfam Ligand-gated ion channel 793 823 IPR001320 GO:0015276|GO:0016020
Gabi1698g00007 927 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 849 IPR015683 -
Gabi1698g00007 927 Gene3D - 737 799 - -
Gabi1698g00007 927 Gene3D - 157 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1698g00007 Gabi-Chr1698 98095 102382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1698g00007 24 843 Ion Channels AT2G29120 33.103 7.51e-135 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1698g00007 - - gmx:100818078 1392.1