Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1697g00002 ATGGGTTGTCAGATTCAGGCCAATTCTGCAACCATGAATGCTCGCAGTAGCTTAAAGAAAACAGAAGATGAAAAGCCTCCTACTCAAAACTCTGAGCAACCAGAGAATTCTTCTGATTCAAAGGATAGGAAACATGAGTCCCAACATAATGTGCAAGAAAATGATTCTGAAGTTAATACCAAGCTTGTGGAAGATAATATGGAGAGTAGCAGCACAGATCAAGATAAAATCTTTAAGAAACCAGACAAGATTCTTCATTGTCCAAGATGCAACAGTTTGGACACTAAATTTTGTTATTTCAACAACTACAATGTCAATCAACCTCGGCATTTCTGCAAGAATTGCCAAAGGTATTGGACTGCTGGTGGAACAATGAGAAGTGTTCCTGTGGGTGCTGGGAGACGGAAGAATAAGCACCTAGTTTCTCAATACCGGCATGTCATTGTAGCTTCTGATGGAAATCCAACAACCATGTTAGAAACCAAAGACTCATCTTGTCACCAATTTGTCTCAACCCAATCTGCTTCTGTTTTCAGGTCTTCAACAGATAATGGTACTGTTTTGAAATTCGGTCCGGATACCCCTCTTAGTAAATCCATGGAGTCAATGCTTAATCTTGGAGACCAGAAAAGAAGTGTTGATGCAAGCTCTATAAATTGCGCGGAAAATGGGGAGGAAGAGGTATCCTTGTGTGGATCTTCTGTGACAAATGCTTTTACTCAAGGAAATGAACTATCAGAACATAATACATCAAAACCTTTGCAGTGTTACCCTGTTCCTCCTTGGGTATTTCCTTGGAATCCAGGTTGGAACAATGTTCATCAATCTTCACTGAACATGTGTAGTAACCCTTATATCACTGATCCTGGTGCAATGCAGTGGTGTCCCACACCAATGGTGGCAGTTCCAACCATTTGCCCACCAAGCATTCCATTGCAAATTTTTCCTGGATCATATTGGAGTGGAACACAAGTGTGGACTAATGCAACAGGAACAGTTTCAATAGGTTCCAATGGTTGCCTTTCACCTTCTTCTTCTACTAGTAACAGCTGCTGTTCAGGCAATAATGGCTCCCCAACACTTGGCAAACACAATAGAGATACTATTTTCACAGATGAAGAGAAGTCAGAGATGTGTGTTTTGGTTCCAAAGACCCTTAGAATTGATGATCCAAATGAGGCCTCAAAAAGTCCTATATGGGCTACATTAGGTTTCAAGCAACAATCTATATCACAAGATGGTATTTCCAAAATAAATGAACCTAAAGGAGAAGGCAAAGACCGTGTATTGGGTGTGTCTCAAGTCTTGAAAGCTAACCCTGCAGCTATTTCTCGTGCTTATGCATTCCAAGAGAGCATGTGA 1362 0.4082 MGCQIQANSATMNARSSLKKTEDEKPPTQNSEQPENSSDSKDRKHESQHNVQENDSEVNTKLVEDNMESSSTDQDKIFKKPDKILHCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRSVPVGAGRRKNKHLVSQYRHVIVASDGNPTTMLETKDSSCHQFVSTQSASVFRSSTDNGTVLKFGPDTPLSKSMESMLNLGDQKRSVDASSINCAENGEEEVSLCGSSVTNAFTQGNELSEHNTSKPLQCYPVPPWVFPWNPGWNNVHQSSLNMCSNPYITDPGAMQWCPTPMVAVPTICPPSIPLQIFPGSYWSGTQVWTNATGTVSIGSNGCLSPSSSTSNSCCSGNNGSPTLGKHNRDTIFTDEEKSEMCVLVPKTLRIDDPNEASKSPIWATLGFKQQSISQDGISKINEPKGEGKDRVLGVSQVLKANPAAISRAYAFQESM 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1697g00002 453 MobiDBLite consensus disorder prediction 36 59 - -
Gabi1697g00002 453 MobiDBLite consensus disorder prediction 1 59 - -
Gabi1697g00002 453 ProSiteProfiles Zinc finger Dof-type profile. 85 139 IPR003851 GO:0003677|GO:0006355
Gabi1697g00002 453 MobiDBLite consensus disorder prediction 1 16 - -
Gabi1697g00002 453 PANTHER CYCLIC DOF FACTOR 2 20 452 IPR045174 GO:0003700|GO:0006355
Gabi1697g00002 453 ProSitePatterns Zinc finger Dof-type signature. 87 123 IPR003851 GO:0003677|GO:0006355
Gabi1697g00002 453 Pfam Dof domain, zinc finger 82 139 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1697g00002 Gabi-Chr1697 59436 62280 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1697g00002 60 452 C2C2-Dof Transcription Factor Family AT5G39660 39.663 4.02e-65 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi1697g00002 zf-Dof 1.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1697g00002 - - ccaj:109792807 691.804