Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1695g00003 ATGCCAAGAATGATCCACTTCAATAAAAGCTATGAAAATGAAGCTATATCAAAAGAAGGGGGTGATGATGACAAAGAGACAATGAACAAAGGGCCATGGACGCCACAAGAAGATACTACATTGAGAGATTATGTGTCAACGTATGGTGAAGGGATGTGGAACTCCGTGTATAAGAGATCTGGGTTGGCAAGGTGTGGCAAAAGTTGTAGATTGAGATGGGCAAATCATTTAAGGCCTTATCTGAAGAAAGGTGCATTTTCTAAAGAGGAAGAACAATTGGTCATCCAGCTTCATGCTCAGCTAGGAAACAAATGGGCTCGAATGGCCGTGCAGTGTTTTGCGGCAAATGAATCATATGATTATCAATCTGGGAGCTACAATCATGGTTTAGATTCCAATGCTGACCTTGGAGGATCTCCATATGAATCCCTTGCTCTTGTTCAAGGCTTGAATACAAAGTTTTCTTCGAGCTTATCACCACCTGGCTCTACCCACCCCAATTTCATCATATTTTAG 516 0.4167 MPRMIHFNKSYENEAISKEGGDDDKETMNKGPWTPQEDTTLRDYVSTYGEGMWNSVYKRSGLARCGKSCRLRWANHLRPYLKKGAFSKEEEQLVIQLHAQLGNKWARMAVQCFAANESYDYQSGSYNHGLDSNADLGGSPYESLALVQGLNTKFSSSLSPPGSTHPNFIIF 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1695g00003 171 CDD SANT 32 77 IPR001005 -
Gabi1695g00003 171 Gene3D - 82 114 - -
Gabi1695g00003 171 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 18 111 - -
Gabi1695g00003 171 Gene3D - 30 81 - -
Gabi1695g00003 171 SUPERFAMILY Homeodomain-like 31 107 IPR009057 -
Gabi1695g00003 171 MobiDBLite consensus disorder prediction 15 37 - -
Gabi1695g00003 171 Pfam Myb-like DNA-binding domain 83 109 IPR001005 -
Gabi1695g00003 171 Pfam Myb-like DNA-binding domain 30 77 IPR001005 -
Gabi1695g00003 171 SMART sant 82 122 IPR001005 -
Gabi1695g00003 171 SMART sant 29 79 IPR001005 -
Gabi1695g00003 171 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 81 IPR017930 -
Gabi1695g00003 171 ProSiteProfiles Myb-like domain profile. 78 109 IPR001005 -
Gabi1695g00003 171 CDD SANT 85 109 IPR001005 -
Gabi1695g00003 171 ProSiteProfiles Myb-like domain profile. 25 77 IPR001005 -
Gabi1695g00003 171 MobiDBLite consensus disorder prediction 15 31 - -
Gabi1695g00003 171 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 107 IPR017930 -
Gabi1695g00003 171 FunFam MYB-related transcription factor 29 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1695g00003 Gabi-Chr1695 69388 70741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1695g00003 17 111 MYB Transcription Factor Family AT4G26930 66.316 1.10e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi1695g00003 Myb_DNA-binding 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1695g00003 K09422 - gmx:100798860 148.288