Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi168g00010 ATGGCTTCTTCATTAGAAACGAAAAATGATGAAGCCAAGAACCTTAAACAAGAAGAAGGACATACACAAGAAGAAGATGGCATCCTTTTTGCCATGAACATGATGAATTCCGTCGTGGTTCCTCTGGCGATTCGGTCCGCAATTGAGATGGGTATCTTCGACATCCTAGCCAAAGCAGGTGAAGGTGTGAAGCTCTCTGCAGAGGACATTGCAGTTCAAATTGGTGCAAAGAACCCAGAAGCAACCAAAATGTTGGATCGTCTTCTGAGGTTGTTGGCTAGTCATCACTCCATTCTATATTGCTCACTTGGTGGAGAAGCACACACAATGCTCTATTGTCTCTCCCCTTTGTCCAAGTATTTTGTGACTGATAATGATGGTGTGTCACTCGGAGCCATCTTGAACTTAAATCTGGACAAGATCCAGATGGAAAGCTGGACAGACTTGAAAGGAGCTATAATGGAAGGTGGTGTACCATTCAACAGGGTTTATGGCATGCATTTATTTGAGTATCTGAGTCTGGATCCCAGGTACAATGATGTTTTCAACAAAGCTATGTTTAGCGTAACCGCTATGGTCATGAAGAGGATTCTTGAGTGCTACGATGGTTTTGAGCACGTAAATACACTGGTCGATGTTGGTGGTGGTCTTGGGATCAATCTCAAACTCATTACTTCCAAATATCCTCATATCCACGGTGTTAATTTTGACTTGCCTCACGTGTTACAGCATGCCCCTATCTATGCCGGGGTGAAACACGAGGGAGGTGATATGTTTGAGAGTGTTCCTAATGGAGATGCCATTGTCATGAAGTGGATACTTCATGACTGGACTGATGAACAATGCTTGAAGTTGTTGAAGAATTGTCATAAGGCTATTCCCAATGATGGAAAAGTAATTGTTGTGGACCATGTTCTTCCAGCTTTGCCTGAGAATACAGCTAATGCCAAGCTTGGTTTCAAATTTGACCTTATCATGATGAATCAAACCCCAGGAGGGAGAGAACGAACCCGACAAGAATTCATGGAATTGGCATTAGGATCTGGATTTACTTGCATCAGATTCGCCTGCTTTGTCGCTGGCTTCTATGTTATGGAGTTCTTCAAGTAG 1110 0.4306 MASSLETKNDEAKNLKQEEGHTQEEDGILFAMNMMNSVVVPLAIRSAIEMGIFDILAKAGEGVKLSAEDIAVQIGAKNPEATKMLDRLLRLLASHHSILYCSLGGEAHTMLYCLSPLSKYFVTDNDGVSLGAILNLNLDKIQMESWTDLKGAIMEGGVPFNRVYGMHLFEYLSLDPRYNDVFNKAMFSVTAMVMKRILECYDGFEHVNTLVDVGGGLGINLKLITSKYPHIHGVNFDLPHVLQHAPIYAGVKHEGGDMFESVPNGDAIVMKWILHDWTDEQCLKLLKNCHKAIPNDGKVIVVDHVLPALPENTANAKLGFKFDLIMMNQTPGGRERTRQEFMELALGSGFTCIRFACFVAGFYVMEFFK 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi168g00010 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 127 367 IPR029063 -
Gabi168g00010 369 Coils Coil 5 25 - -
Gabi168g00010 369 Gene3D - 6 121 IPR036388 -
Gabi168g00010 369 PANTHER O-METHYLTRANSFERASE 31 358 IPR016461 GO:0008168
Gabi168g00010 369 FunFam Caffeic acid O-methyltransferase 122 369 - -
Gabi168g00010 369 SUPERFAMILY "Winged helix" DNA-binding domain 23 125 IPR036390 -
Gabi168g00010 369 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 32 369 IPR016461 GO:0008168
Gabi168g00010 369 FunFam Caffeic acid 3-O-methyltransferase 2 121 - -
Gabi168g00010 369 MobiDBLite consensus disorder prediction 1 21 - -
Gabi168g00010 369 PIRSF O-mtase 8 369 IPR016461 GO:0008168
Gabi168g00010 369 Gene3D Vaccinia Virus protein VP39 122 369 IPR029063 -
Gabi168g00010 369 Pfam Dimerisation domain 43 93 IPR012967 GO:0046983
Gabi168g00010 369 Pfam O-methyltransferase domain 146 350 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi168g00010 Gabi-Chr168 129092 130958 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi168g00010 21 369 Monolignol Biosynthesis Gene Families AT5G54160 48.580 1.94e-125 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi168g00010 K13066 - gmx:100789402 520.776