Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi168g00009 | ATGGCTTCTTCATTAGAAACGAAAAATGATGAAGCCAAGAACCTTAAACAAGAAGAAGGACATACACAAGAAGAAGATGGCATGCTTTTTGCCATGAACATGATGGCTTCCGTCGTGGTTCCTCTGGCGATTCGGTCCGCAATTGAGATGGGTATCTTCGACATCCTAGCCAAAGCAGGTGAAGGTGTGAAGCTCTCTGCAGAGGACATTGCAGTTCAAATTGGTGCAAAGAACCCAGAAGCAACCAAAATGTTGGATCGTCTTCTGAGGTTGTTGGCTAGTCATCACTCCATTCTATATTGCTCACTTGGTGGAGAAGCACACACAATGCTCTATTGTCTCTCCCCTTTGTCCAAGTATTTTGTGACTGATAATGATGGTGTGTCACTCGGAGCCATCTTGAACTTAAATCTGGACAAGATCCAGATGGAAAGCTGGACAGACTTGAAAGGAGCTATAATGGAAGGTGGTGTACCATTCAACAGGGTTTATGGCATGCATTTATTTGAGTATCTGAGTCTGGATCCCAGGTACAATGATGTTTTCAACAAAGCTATGTTTAGCGTAACCGCTATGGTCATGAAGAGGATTCTTGAGTGCTACGATGGTTTTGAGCACGTAAATACACTGGTCGATGTTGGTGGTGGTCTTGGGATCAATCTCAAACTCATTACTTCCAAATATCCTCATATCCACGGTGTTAATTTTGACTTGCCTCACGTGTTACAGCATGCCCCTATCTATGCCGGGGTGAAACACGAGGGAGGTGATATGTTTGAGAGTGTTCCTAATGGAGATGCCATTGTCATGAAGTGGATACTTCATGATTGGACTGATGAACAATGCTTGAAGTTGTTGAAGAATTGTCATAAGGCTATTCCCAATGATGGAAAAGTAATTGTTGTGGACCATGTTCTTCCAGCTTTGCCTGAGAATACAGCTAATGCCAAGCTTGGTTTCAAATTTGACCTTATCATGATGAATCAAACCCCAGGAGGGAGAGAACGAACCCGACAAGAATTCATGGAATTGGCATTAGGATCTGGATTTACTTGCATCAGATTCGCCTGCTTTGTCGCTGGCTTCTATGTTATGGAGTTCTTCAAGTAG | 1110 | 0.4315 | MASSLETKNDEAKNLKQEEGHTQEEDGMLFAMNMMASVVVPLAIRSAIEMGIFDILAKAGEGVKLSAEDIAVQIGAKNPEATKMLDRLLRLLASHHSILYCSLGGEAHTMLYCLSPLSKYFVTDNDGVSLGAILNLNLDKIQMESWTDLKGAIMEGGVPFNRVYGMHLFEYLSLDPRYNDVFNKAMFSVTAMVMKRILECYDGFEHVNTLVDVGGGLGINLKLITSKYPHIHGVNFDLPHVLQHAPIYAGVKHEGGDMFESVPNGDAIVMKWILHDWTDEQCLKLLKNCHKAIPNDGKVIVVDHVLPALPENTANAKLGFKFDLIMMNQTPGGRERTRQEFMELALGSGFTCIRFACFVAGFYVMEFFK | 369 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi168g00009 | 369 | PIRSF | O-mtase | 8 | 369 | IPR016461 | GO:0008168 | |
| Gabi168g00009 | 369 | Gene3D | - | 6 | 121 | IPR036388 | - | |
| Gabi168g00009 | 369 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 127 | 367 | IPR029063 | - | |
| Gabi168g00009 | 369 | Coils | Coil | 5 | 25 | - | - | |
| Gabi168g00009 | 369 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Gabi168g00009 | 369 | Gene3D | Vaccinia Virus protein VP39 | 122 | 369 | IPR029063 | - | |
| Gabi168g00009 | 369 | FunFam | Caffeic acid O-methyltransferase | 122 | 369 | - | - | |
| Gabi168g00009 | 369 | PANTHER | O-METHYLTRANSFERASE | 31 | 358 | IPR016461 | GO:0008168 | |
| Gabi168g00009 | 369 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 32 | 369 | IPR016461 | GO:0008168 | |
| Gabi168g00009 | 369 | FunFam | Caffeic acid 3-O-methyltransferase | 2 | 121 | - | - | |
| Gabi168g00009 | 369 | Pfam | Dimerisation domain | 43 | 93 | IPR012967 | GO:0046983 | |
| Gabi168g00009 | 369 | SUPERFAMILY | "Winged helix" DNA-binding domain | 23 | 125 | IPR036390 | - | |
| Gabi168g00009 | 369 | Pfam | O-methyltransferase domain | 146 | 350 | IPR001077 | GO:0008171 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi168g00009 | Gabi-Chr168 | 120021 | 121885 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi168g00009 | 21 | 369 | Monolignol Biosynthesis Gene Families | AT5G54160 | 48.580 | 1.76e-125 | 363 |