Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi168g00006 ATGACCACTAATCAAGCCACTTCAGCGGATGAGGATCCAATAAGTTATATTGACTGCAGTGAAGATTGCATTCCAAATGACTTATCTAATGAAATGGAATATGGTGAAATCAAAGATTCCAGAAATGATGAAATAGAAGATGATATACCTAATGACTTGTTTGATAATAAGTTTAATGCCATTCTATTATCACCAACAAAGAGTACTACTGTTATAATTGAGGTTGGAATGAAATTTTCCGAACAAAAGGATATATTAGACTTGTATACAACATTTGGGAAGGCAAAAGGTTTTGGAATTCGGAAAAGAACATCCAACGAGAACTACGTGATGCTAACATGTGTTAGAGAGGGCTATCATCAACCGAGAAAGGGAAAAGATGTGCGTGAATTGTGTGCAACCAAACCAAGGCGGACATCATCATCACGTATGGGGTGTGAAGCTTGTCTCAAGGCTTCTAGAGAGAAAAAAACAAAAATGTGGAAAATCACATATTTCATTGACAAGCATAACCATAAGATGGTTACTCCAAAAAGTGTTTCATATTTGAGATCACATAGAAAAATGCCCGATGCTGCAAAATGTTTGATAGAAGAATTCAATAACGCGGGTTTGCCTACTGGAAAGGTGGCCACCATCTTCAAAAGCCATGATTTAGGGTTTGACAGTCGAGATTGTTATAATCATATGAAAAATGTGAGGAGAAGGGTATACGATGTCGGGGATGCACAAGTTGTGCTACTTTATTGTATTAAACAACAATCACTGAATCCTAGTTTTTTTTATTCTATTATGTGTGACGATGATGATCGTATGGTTAGTTTTTTTTGGATTGATGCAAGATCCAGGCACGCCTATGAGCTTTTTGGGGATGTCATCACATTTGACACAACATATAGGACTAATAAGTATTCCATGCCATTTGGACCCTTTGTTGGTGTAAATAATCATTTTCAGTCCCTCTTATTTGGATGTGCTTTATTACACGATGAGACTGAGGATAGTTTTGTATGGCTTTTTGAGGAATGGCTTCGAGCAATGAATGGAAAACATCCAGTTGCCATAATTACTGATCAAGACTTGGCGATTAGCAATGCAGTCTCCAAAGTTTTTCCAAATACGAAACACAGATTTTGTTTGTGGCATATCATGAAAAAGTTTCCAGAAAAGTTATCTCATCTCTACCATGACCACGCATCATTTAAAAGGCATTTGAATGACTGTATTTGGAGCTCCAAGAGCACTCAAGAGTTTGAAGATAGATGGCAAAGATTTCTTATTCAGTATGGTCTTATTGAAAATGAGTGGTTGAATGTACTTTATACAATTAGATCCTCTTGGGTACCAATCTTTAACCATTCCACTTTCTTTGCTGGTATGAACACTACTCAACGTAGCGAAAGTATAAATTCATTTTTTGATGGTTTTGTTACATCTGGCACAACTTTAAAGGAATTTGTGGAGAAATATAATCAAGCAATAGATGCTCGCTACGAGTCATTTAAAAAAGAAGACTTTGAATCTAGGCACAAAGAAAGGATTTTGACATTTAATATGCCATTGGAGGAGCATGCTGCTAAAGTGTATACCCGTGCAATTTTTTTAAAGTTTTGCGATCAACTTTCTCTTAGTTTACGATTTTCTAAGGAGAAACTTGGGGATGATTGTGAGTGGGTTATGTACCGAGTTTTTAATAGGAAAGATGTAGAAGATTATGCAACAGTTGAGATGAAATTGGAAAACAGAGAAGCTAGGTGTTCTTGCCATTATTATGAGTTCATGGGAATCTTATGTCGGCACATGCTTGCTATTTTTTTTATTGAAAATGTTGAACAGATTCCTGAACACTTCATTCTGCAGCGTTGGAGCAAGGAAGGAAATGTGATACCAAGCGGAGAGAAGGACAGATGTACCGCAAATGGAGATAGACTTCTTCGCAGCTTTCATCTACGCTCTAGATATTCCAAACTTGATGACCTTGCATATAAGTCAGATGAAGCATTTAAATTAATTTGTGATGGTATTGATTCTCTCTATAAAGCAGCAGAAAAAGTTCTAGCGTGCGAAGAGAGTAGTGGTCTTGGGGATTCTAATTTACAGTTGTTGGGTTTTCATCATGAAGAGCCTTCTATGATGTACTTGAAGGATCCAAATATTTCACAAACGAAAGGGCGGAAAAGGGACTCACAAAGTACTTCACAGGGACACAGGATTCGTAGCGGGATTGAAGAAGCATCAAAGCATACTAATATTTGTGGCAATTTACATCTGACAACCATTATTTTTGAGTCTGATTTTGACATGGATATGGTCTCTTTTTGTGTTGCTAAGCTTTGCATACGATGTGGTTGGCAGAAGCTTGGTGCATTTGTCAATCTAGGATCTTATTATCTTGTGGGAGTTCCTTTAGCAGTTGTGTTTGCTTTTATCCTCCATATGAATGGGCGGGGGTTAGTTTTGGCAATTGTATTAGCACTTATAGTAAAAGTGGTGTGTTTTCTTGTAGTCATATTACGCACCAATTGGGAGAAAGAAGTAACATGTTCACCAATTGGCAAGCCATAA 2565 0.3712 MTTNQATSADEDPISYIDCSEDCIPNDLSNEMEYGEIKDSRNDEIEDDIPNDLFDNKFNAILLSPTKSTTVIIEVGMKFSEQKDILDLYTTFGKAKGFGIRKRTSNENYVMLTCVREGYHQPRKGKDVRELCATKPRRTSSSRMGCEACLKASREKKTKMWKITYFIDKHNHKMVTPKSVSYLRSHRKMPDAAKCLIEEFNNAGLPTGKVATIFKSHDLGFDSRDCYNHMKNVRRRVYDVGDAQVVLLYCIKQQSLNPSFFYSIMCDDDDRMVSFFWIDARSRHAYELFGDVITFDTTYRTNKYSMPFGPFVGVNNHFQSLLFGCALLHDETEDSFVWLFEEWLRAMNGKHPVAIITDQDLAISNAVSKVFPNTKHRFCLWHIMKKFPEKLSHLYHDHASFKRHLNDCIWSSKSTQEFEDRWQRFLIQYGLIENEWLNVLYTIRSSWVPIFNHSTFFAGMNTTQRSESINSFFDGFVTSGTTLKEFVEKYNQAIDARYESFKKEDFESRHKERILTFNMPLEEHAAKVYTRAIFLKFCDQLSLSLRFSKEKLGDDCEWVMYRVFNRKDVEDYATVEMKLENREARCSCHYYEFMGILCRHMLAIFFIENVEQIPEHFILQRWSKEGNVIPSGEKDRCTANGDRLLRSFHLRSRYSKLDDLAYKSDEAFKLICDGIDSLYKAAEKVLACEESSGLGDSNLQLLGFHHEEPSMMYLKDPNISQTKGRKRDSQSTSQGHRIRSGIEEASKHTNICGNLHLTTIIFESDFDMDMVSFCVAKLCIRCGWQKLGAFVNLGSYYLVGVPLAVVFAFILHMNGRGLVLAIVLALIVKVVCFLVVILRTNWEKEVTCSPIGKP 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi168g00006 854 ProSiteProfiles Zinc finger SWIM-type profile. 573 609 IPR007527 GO:0008270
Gabi168g00006 854 SMART 26again6 584 611 IPR006564 GO:0008270
Gabi168g00006 854 Pfam SWIM zinc finger 581 605 IPR007527 GO:0008270
Gabi168g00006 854 Pfam MULE transposase domain 292 386 IPR018289 -
Gabi168g00006 854 Pfam FAR1 DNA-binding domain 88 175 IPR004330 -
Gabi168g00006 854 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 74 675 IPR031052 GO:0006355
Gabi168g00006 854 MobiDBLite consensus disorder prediction 717 739 - -
Gabi168g00006 854 MobiDBLite consensus disorder prediction 724 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi168g00006 Gabi-Chr168 59371 62918 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gabi168g00006 MULE 1.9e-31 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi168g00006 - - vvo:131633311 683.33