Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi168g00002 ATGGAGGACTTTATCATCTCTCCTTCTTCATCCTCAGTCTCTCTGACCCAAGAAAACACATCACCAACCCTTCATCAAAAGCTTCAATTTTTACTCCAAACCCAACCTGATTGGTGGGTCTACGCCATTTTTTGGCAAACCACGAACGATGAAAATGGCAACCTCTACTTATCATGGGGTGAAGGCCATTTCCAAGGCACTAAAGAAACCACCCCAAAATCACTACCTGACATGAACACAACTATTAACCCCCAAAACCATGACCCCATTTCCGAAGAGCGAAGAAAGATCATGAAAGAAATCCAATCCCTGATAAACGACAACAACACAAGCACAAACGACGACCTAAACGACGCTGAGTGGTTCTATGTCATGTCGTTGACTCGCACCTTCTCCGTTGGCAATGCTCCTTCATCATCCCTCCCTGGCAAGGCCTTCGCCTTGGGTTCCGTTCTTTGGTTGAACAGCAAGCACGAGCTTCAATTCTACAACTGCGACAGAGCCAATGACGCGCACGTGCACGGGATCGAAACCTTAATCTACATCCCAACAACCAACGGCGTCGTCGAAATGGGTTCCTACGACACCATCAAACAAAACTGGGGTCTCGTCCAACACGCCAAATCTCTGTTAGGTTCGTCATCGTCGTCATCACCACCACCACTATCAGATCTTGTTGCCGCCATGGCACACGACGACGACAAGAACCTTAACCAAATCAAAATCTTCGACGACGACGAGAACAACAACAACAACAACAACATATCCTTCGCCGACATAGGCATCATCGCCGGTGTCGAAGAAGAAGAAGATAGGCAGAGGAAGAGAAAGGAAATGGAACCCAATAAGAAAAAGAACGATTCTTCATCAGTTCTCAAATTTGGGTCATCATCTTATGTGGATTCTGAACATTCTGACTCTGATTGTCCACTGTTAACAACAACCAACACCTCAATAGAGAAAAGAGAACCAAAGAAGAGAGGTAGAAAACCGGTTCTGGGCCGCGAAACCCCAATGAACCACGTGGAGGCAGAGAGACAGAGGAGGGAGAAGCTGAACCACCGATTCTACGCGTTGAGATCGGTGGTTCCGAACGTGTCGAGGATGGACAAGGCTTCTCTGTTATCAGATGCTGTTGCTTACATCAACGAACTGAAAGCGAAGATTGATGAGTTGGAATCGCAGAATCAGAGGGATTCAAGCAAGAAAGTGAAGTTGGAAATGGGGGATACAATGGATAACCAGAGCACAACAACAACTTCAATGGTGGTGGACCAAAAGGGGCCTCATGGTTTTGCACTTGAGGTTGATGTGAAGATCGTAGGGAATGATGCAATGGTGAGAGTTCAATCGGAGAATGTGAACCACCCAGGGGCAAGGTTAATGGGTGCATTGAGGGACTTGGAGTTTCAGGTACACCACGCTAGCATGTCATGTGTTAATGAACTTATGCTTCAAGATGTTGTTGTTAAGATTCCTAATGGCATGCGAAGCGAAGAGGGTCTTCTTAAATCTGCGATTCTCATGAGATTGGATCAGTAG 1542 0.4637 MEDFIISPSSSSVSLTQENTSPTLHQKLQFLLQTQPDWWVYAIFWQTTNDENGNLYLSWGEGHFQGTKETTPKSLPDMNTTINPQNHDPISEERRKIMKEIQSLINDNNTSTNDDLNDAEWFYVMSLTRTFSVGNAPSSSLPGKAFALGSVLWLNSKHELQFYNCDRANDAHVHGIETLIYIPTTNGVVEMGSYDTIKQNWGLVQHAKSLLGSSSSSSPPPLSDLVAAMAHDDDKNLNQIKIFDDDENNNNNNNISFADIGIIAGVEEEEDRQRKRKEMEPNKKKNDSSSVLKFGSSSYVDSEHSDSDCPLLTTTNTSIEKREPKKRGRKPVLGRETPMNHVEAERQRREKLNHRFYALRSVVPNVSRMDKASLLSDAVAYINELKAKIDELESQNQRDSSKKVKLEMGDTMDNQSTTTTSMVVDQKGPHGFALEVDVKIVGNDAMVRVQSENVNHPGARLMGALRDLEFQVHHASMSCVNELMLQDVVVKIPNGMRSEEGLLKSAILMRLDQ 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi168g00002 513 MobiDBLite consensus disorder prediction 268 347 - -
Gabi168g00002 513 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 24 210 IPR025610 -
Gabi168g00002 513 MobiDBLite consensus disorder prediction 288 318 - -
Gabi168g00002 513 CDD bHLH_AtAIB_like 334 417 - -
Gabi168g00002 513 Gene3D - 334 401 IPR036638 GO:0046983
Gabi168g00002 513 PANTHER MYC 15 510 IPR045084 GO:0003700|GO:0006355
Gabi168g00002 513 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 385 IPR011598 GO:0046983
Gabi168g00002 513 MobiDBLite consensus disorder prediction 319 347 - -
Gabi168g00002 513 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 337 398 IPR036638 GO:0046983
Gabi168g00002 513 Pfam Helix-loop-helix DNA-binding domain 340 385 IPR011598 GO:0046983
Gabi168g00002 513 MobiDBLite consensus disorder prediction 268 287 - -
Gabi168g00002 513 Coils Coil 375 402 - -
Gabi168g00002 513 SMART finulus 342 391 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi168g00002 Gabi-Chr168 16332 18320 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi168g00002 24 502 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 34.087 2.40e-94 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi168g00002 bHLH-MYC_N 2.2e-50 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi168g00002 - K13422 gmx:100804965 617.461