Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1689g00007 ATGGAGCAACACCAACAGCAACAGAGGTTAAAGCAACATGCGATGATGCAACAATCACTCTATCATCACCCCGCTCTCTATACACACCCTCAGATAGAACCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCAAGTACATGCCGCAGTGTTTATGTGGGCAACATTCATCCTCAAGTTACAGAGGCCCTTCTTCAAGAGCTTTTTTCAAATGCGGGCCCTCTTGAAGGATGCAAGCTCATTAAGAAAGAGAAGTCATCCTATGGCTTTGTGGACTACTTTGATCGCAGTTCAGCTGCTTTTGCTATTGGAACTCTCAATGGGAGGAACATTTTTGGGCAGCCTATTAAAGTTAACTGGGCTTATGCTAGCAGCCAGAAAGAGGATACATCAGGTCACTTCAATATTTTTGTTGGTGATCTGAGCCCTGAGGTTACTGATGCTACACTGTTTGCTTGCTTCTCTATATATTCTAGTTGTTCAGATGCAAAGGTCATGTGGGATCCAAAGACCGGCCGTTCCAGGGGATTTGGTTTCGTTTCCTTTCGAAATCAGCAGGATGCCCAAGGTGCCATAAATGATCTAACTGGAAAGTGGCTTGGAAATAGACAGATTCGTTGTAACTGGGCCATGAAAGGGGGTAATGCCAATGATGACAAGCAGAGTTCGGATTCCAAAACTGTTGTGGAGTTAACAAATGGAACATTTGAAGAAGGCCAAGAAATGACTAATGATGACTCTCGAGAGAAGAATCCTCAATATACTACTGTTTATGTTGGCAATCTTGCTCCAGAGGTTAATTCTGGTGATCTTCATCGTCAATTTCTTGCCCTGGGCGCTGGAACTATTATAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGTTTTGTGAGATTTAGTACACATGCGGAAGCAGCTTTTGCCATTCAGATGGGTAATGCTCAGGTTCTGTTTGGCAAACCCATGAAGTGTTCATGGGGTAGTAAGCCTACCCCACCGGGAACAGCCTCTACTCCCCTTGCACCACCAACTGCTGCACAGGTGCCAGGCTTTTCACCCACTACACTAGCAGCATATGAACGCCAAATGGCCTTGAGCAAAATGGGGGGTGCTCATGCTTTCATGCATCAGCAGGGTCAGCATTCTGCTCCTGGGGCTGGTTATGGTGCAGGATTCCAGAATGTTGCGTCTAACCAGCATCTAATGTACTATCAGTAA 1221 0.4545 MEQHQQQQRLKQHAMMQQSLYHHPALYTHPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTEALLQELFSNAGPLEGCKLIKKEKSSYGFVDYFDRSSAAFAIGTLNGRNIFGQPIKVNWAYASSQKEDTSGHFNIFVGDLSPEVTDATLFACFSIYSSCSDAKVMWDPKTGRSRGFGFVSFRNQQDAQGAINDLTGKWLGNRQIRCNWAMKGGNANDDKQSSDSKTVVELTNGTFEEGQEMTNDDSREKNPQYTTVYVGNLAPEVNSGDLHRQFLALGAGTIIDVRVQRDKGFGFVRFSTHAEAAFAIQMGNAQVLFGKPMKCSWGSKPTPPGTASTPLAPPTAAQVPGFSPTTLAAYERQMALSKMGGAHAFMHQQGQHSAPGAGYGAGFQNVASNQHLMYYQ 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1689g00007 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 137 207 IPR000504 GO:0003723
Gabi1689g00007 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 258 323 IPR000504 GO:0003723
Gabi1689g00007 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 118 IPR000504 GO:0003723
Gabi1689g00007 406 FunFam oligouridylate-binding protein 1-like isoform X2 133 228 - -
Gabi1689g00007 406 Gene3D - 133 234 IPR012677 -
Gabi1689g00007 406 CDD RRM2_PUB1 134 213 - -
Gabi1689g00007 406 Gene3D - 235 334 IPR012677 -
Gabi1689g00007 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 256 330 IPR000504 GO:0003723
Gabi1689g00007 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 135 213 IPR000504 GO:0003723
Gabi1689g00007 406 Gene3D - 1 132 IPR012677 -
Gabi1689g00007 406 SMART rrm1_1 257 326 IPR000504 GO:0003723
Gabi1689g00007 406 SMART rrm1_1 51 120 IPR000504 GO:0003723
Gabi1689g00007 406 SMART rrm1_1 136 209 IPR000504 GO:0003723
Gabi1689g00007 406 SUPERFAMILY RNA-binding domain, RBD 39 127 IPR035979 GO:0003676
Gabi1689g00007 406 SUPERFAMILY RNA-binding domain, RBD 127 216 IPR035979 GO:0003676
Gabi1689g00007 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 124 IPR000504 GO:0003723
Gabi1689g00007 406 SUPERFAMILY RNA-binding domain, RBD 248 334 IPR035979 GO:0003676
Gabi1689g00007 406 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 47 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1689g00007 Gabi-Chr1689 85028 95593 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1689g00007 35 330 Eukaryotic Initiation Factors Gene Family AT1G22760 26.059 1.07e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1689g00007 K13201 - gmx:100813736 679.863