Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1689g00004 ATGCGAGCGTTATCCAACATGAGAGCTCTTCTTCTTCTTCTTCTTCTTCTCTGCTTGTTCTCGCTGCTTCTCGTTTCAGTGACCGCCGTGAACCCGTCACTGAACGACGACGTTCTAGGGCTGATTGTGTTCAAAGCTGACGTACAAGATCCCAAGGGAAAGCTCGCATCTTGGAATGAAGATGATGAGAGTGCTTGTGGTGGTAGGTGGGTCGGCGTGAAATGTAACCCTAGATCCAATAGGGTGGTGGAGGTTAACCTTGATGGGTTCTCTCTCTCTGGAAGAATAGGTCGAGGCCTTCAAATGTTGCAATTTCTGCGCAAGCTTTCTCTGGCGAACAACAACCTCACGGGGGGTATAAGCCCCAACATTGCTCGTATCAATAACCTTAGGGTCATTGATTTGAGTGACAACAATTTGTCAGGGGAGGTGCCTGATGATTTTTTCCGACAATGTGGGTCTCTCAGGACTGTTTCTTTGGCGAGGAATAAATTTTCTGGTAATGTTCCTTCTAGTTTGGGGTCATGTTCAGCTATTGCTTCCATTGACCTCTCTTTTAACCAGTTTTCGGGTTCTGTTCCTCCTGGGATTTGGGCTTTGAGTGGACTCAGGTCCCTGGATTTGTCTGATAACTTGTTGGAGGGTGAGATTTCGAAAGGGGTTGAGGCAATGAAGAATTTGCGGAGCATTAACTTGGCAAGGAATCGGTTTTCTGGGGAGATTCCAGATGGTTATGGAAGTTGCTTGCTTTTGAGGTCTATTGATTTCAGCGAGAATTCTCTTTCTGGTAGTATCCCTGGGGATTTGAAGGAACTCACGTTGTGTAATTACCTTAGTTTGCGTGGAAATGCCTTCTCAGGAGATGTTCCTGAGTGGGTTGGAGAGATGAAAGGCCTTGAGATATTGGACCTCTCAAACAATAGATTTTCTGGTCATGTGCCAGACTCTATAGGAAATCTTCAGTCATTGAAGACGTTGAATTTTTCTGCAAATGATTTCACTGGTAATCTGCCAGAGTCTATGGTATATTGCACAAGCCTTTTGGCCTTGGATGTTAGCAGGAATTCAATGTCCGGAGGTCTTCCTTCATGGATTTTCAAGTCAGATTTGGAGAAGGTTTTGGTATCTGAAAACAGGCTGAGTGGTAGCCTGGAAAAAAGCCCATTGTATCCCTTGGCTGAAGTTGCAGTCCAAAGTCTTCAAGTTTTGGATTTATCTGACAATGCATTTTATGGTGAAATCACTTCTGCTATTGCAGGTTTAACTAGCTTGCAATTTTTGAATTTATCGAAGAACTCTCTAAGAGGTCCGGTACCAGCTGCAATTGGTGAATTAAAATCATGTTCTAGTCTTGATTTGAGTCATAATAGCCTAAACGGATGCATACCTTGGGAAATAGGAGGAGCTTTGTCCTTGAAAAAATTTAGATTGGATAATAACTACCTAATTGGGAAAATTCCAAGCTCAATTGAGAACTGCTCTTCGTTAACAACTTTGATTCTGTCCCAGAACAGGCTGAGTGGTTCGATACCTGCAGCAGTTGCAAAACTTACCAACCTGCAAACTGTGGACTTATCATTTAACAACCTCAGTGGAAACCTTCCCAAGCAATTAGCCAACCTTCCCAATCTTCTTTTGTTCAATTTATCTCACAACAACCTTCAAGGTGAACTGCCTGCTGGTGGGTTTTTCAACACCATTTCGCCTTCCTCTGTTTCTGGCAATCCATCGCTTTGTGGCTCTGCAGTGAACAAATCATGCCCTACTGTTCTCCCAAAGCCTATTGTTCTAAATCCCAACACTACTGACTCTGGCCGCCCAGATTCCCTGCCTCCAAATTTGGGTCACAAGAGAATCATTCTCAGCATTTCTGCTCTCATCGCCATTGGTGCAGCTGCTGTCATTGTAATTGGTGTCATTGGCATCACTGTTCTCAATCTCCGTGTTCGGTCCTCCACAGCTCGATCTGCAGCTGCACTCGCATTTTCCGCAGGGGATGAATTCAGCCATTCCCCAACTACCGATGCCAACTCTGGCAAGCTTGTTATGTTTTCAGGTGAGCCTGATTTCAGCTCTGGAGCACATGCTTTGCTTAATAAGGATTGTGAGCTTGGGCGTGGAGGGTTCGGGGCAGTATATCAAACAGTTCTTGGAGATGGGCGTTCAGTTGCTATAAAGAAACTCACTGTCTCAAGTCTTGTTAAGTCTCAAGAAGATTTCGAAAGAGAAGTGAAGAAATTAGGAAAAGTCAGACACCAAAATCTTGTGGAACTCGAAGGTTATTATTGGACTACATCACTGCAGCTCCTCATATACGAGTATGTCTCTGGCGGTAGTCTGTATAAGCATCTCCATGAAGGATCAGGCGGAAACTTCCTCTCATGGAATGAGAGGTTTAATGTGATTCTGGGGACAGCAAAGGCCTTGGCTCACTTGCATCACTCCAACATTATTCACTATAACATTAAGTCAACCAATGTCCTTATTGATAGTTACGGTGAACCTAAAGTTGGGGATTTTGGCCTAGCAAGACTGTTACCAATGCTTGATAGCTATATTTTGAGCAGCAAAATTCAGAGCGCACTTGGCTACATGGCCCCAGAGTTTGCCTGCAAAACGGTTAAAATTACTGAGAAATGTGATGTTTATGGGTTTGGAGTTTTGGTTTTGGAGATTGTTACAGGGAAGAGGCCTGTGGAATATATGGAGGATGATGTGGTGGTACTTTGTGACATGGTCAGAGGAGCTTTGGAAGAAGGCAGGGTGGAGGAATGTATTGATGAGAGACTCCAAGGGAAGTTCCCAGCAGAGGAAGCCATTCCTGTGATGAAGTTAGGCTTAATATGTACTTCTCATGTGCCTTCTAATCGCCCTGACATGGGAGAGGTTGTTAACATTCTGGAACTTATAAGATGTCCCTCAGAAGGACAGGAGGAGTTGTTGGGATGA 2949 0.4425 MRALSNMRALLLLLLLLCLFSLLLVSVTAVNPSLNDDVLGLIVFKADVQDPKGKLASWNEDDESACGGRWVGVKCNPRSNRVVEVNLDGFSLSGRIGRGLQMLQFLRKLSLANNNLTGGISPNIARINNLRVIDLSDNNLSGEVPDDFFRQCGSLRTVSLARNKFSGNVPSSLGSCSAIASIDLSFNQFSGSVPPGIWALSGLRSLDLSDNLLEGEISKGVEAMKNLRSINLARNRFSGEIPDGYGSCLLLRSIDFSENSLSGSIPGDLKELTLCNYLSLRGNAFSGDVPEWVGEMKGLEILDLSNNRFSGHVPDSIGNLQSLKTLNFSANDFTGNLPESMVYCTSLLALDVSRNSMSGGLPSWIFKSDLEKVLVSENRLSGSLEKSPLYPLAEVAVQSLQVLDLSDNAFYGEITSAIAGLTSLQFLNLSKNSLRGPVPAAIGELKSCSSLDLSHNSLNGCIPWEIGGALSLKKFRLDNNYLIGKIPSSIENCSSLTTLILSQNRLSGSIPAAVAKLTNLQTVDLSFNNLSGNLPKQLANLPNLLLFNLSHNNLQGELPAGGFFNTISPSSVSGNPSLCGSAVNKSCPTVLPKPIVLNPNTTDSGRPDSLPPNLGHKRIILSISALIAIGAAAVIVIGVIGITVLNLRVRSSTARSAAALAFSAGDEFSHSPTTDANSGKLVMFSGEPDFSSGAHALLNKDCELGRGGFGAVYQTVLGDGRSVAIKKLTVSSLVKSQEDFEREVKKLGKVRHQNLVELEGYYWTTSLQLLIYEYVSGGSLYKHLHEGSGGNFLSWNERFNVILGTAKALAHLHHSNIIHYNIKSTNVLIDSYGEPKVGDFGLARLLPMLDSYILSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEIVTGKRPVEYMEDDVVVLCDMVRGALEEGRVEECIDERLQGKFPAEEAIPVMKLGLICTSHVPSNRPDMGEVVNILELIRCPSEGQEELLG 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1689g00004 982 Gene3D Ribonuclease Inhibitor 390 466 IPR032675 -
Gabi1689g00004 982 Pfam Protein tyrosine and serine/threonine kinase 700 966 IPR001245 GO:0004672|GO:0006468
Gabi1689g00004 982 Gene3D Ribonuclease Inhibitor 467 588 IPR032675 -
Gabi1689g00004 982 Gene3D Ribonuclease Inhibitor 290 389 IPR032675 -
Gabi1689g00004 982 Gene3D Ribonuclease Inhibitor 35 193 IPR032675 -
Gabi1689g00004 982 Gene3D Ribonuclease Inhibitor 194 289 IPR032675 -
Gabi1689g00004 982 SMART LRR_typ_2 296 320 IPR003591 -
Gabi1689g00004 982 SMART LRR_typ_2 517 540 IPR003591 -
Gabi1689g00004 982 SMART LRR_typ_2 127 151 IPR003591 -
Gabi1689g00004 982 SMART LRR_typ_2 421 445 IPR003591 -
Gabi1689g00004 982 SMART LRR_typ_2 200 224 IPR003591 -
Gabi1689g00004 982 SMART LRR_typ_2 541 565 IPR003591 -
Gabi1689g00004 982 ProSitePatterns Protein kinases ATP-binding region signature. 704 727 IPR017441 GO:0005524
Gabi1689g00004 982 Gene3D Phosphorylase Kinase; domain 1 692 774 - -
Gabi1689g00004 982 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 397 968 - -
Gabi1689g00004 982 Pfam Leucine rich repeat N-terminal domain 35 76 IPR013210 -
Gabi1689g00004 982 SUPERFAMILY L domain-like 66 290 - -
Gabi1689g00004 982 Gene3D Transferase(Phosphotransferase) domain 1 775 979 - -
Gabi1689g00004 982 Pfam Leucine rich repeat 298 356 IPR001611 GO:0005515
Gabi1689g00004 982 Pfam Leucine rich repeat 471 530 IPR001611 GO:0005515
Gabi1689g00004 982 Pfam Leucine rich repeat 129 189 IPR001611 GO:0005515
Gabi1689g00004 982 Pfam Leucine rich repeat 399 458 IPR001611 GO:0005515
Gabi1689g00004 982 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 35 315 - -
Gabi1689g00004 982 ProSiteProfiles Protein kinase domain profile. 698 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1689g00004 982 SUPERFAMILY L domain-like 226 571 - -
Gabi1689g00004 982 CDD STKc_IRAK 704 970 - -
Gabi1689g00004 982 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 775 976 - -
Gabi1689g00004 982 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 316 591 - -
Gabi1689g00004 982 SUPERFAMILY Protein kinase-like (PK-like) 701 971 IPR011009 -
Gabi1689g00004 982 SMART LRR_sd22_2 517 543 - -
Gabi1689g00004 982 SMART LRR_sd22_2 296 322 - -
Gabi1689g00004 982 SMART LRR_sd22_2 200 223 - -
Gabi1689g00004 982 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 692 774 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1689g00004 Gabi-Chr1689 34030 38002 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1689g00004 19 980 Receptor kinase-like Gene Family AT3G56370 67.798 0.0 1276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Gabi1689g00004 PK_Tyr_Ser-Thr 1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1689g00004 - - gmx:100791629 1582.39