Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1689g00001 ATGAAACTGAGTGAGATTGGTCTCAAGCCTGAACTAGATCAGGCTTCCAGTTCCAAACCCTTGGCGCTGCTAGATCTCTTGAAGCTTTCCAATGGCGATAAGGTTGCTGCTCCTGAACCAAAGGTTGAACTTGATCTGTTCAACCCATCAGGTAATAATGTTGTTGGTTCATCTAATTCTAGGGTTCATGATACTGAAGGCATTGAGGAAAACGAAAACTCAAAGACAGAGGCAAAGAGTTTCTCATGCAACTTTTGCAAGAGAAAATTCTCTACCTCACAAGCTTTGGGAGGGCATCAAAAAGCTCATAAAGGAGAGCGTGCCTTTGCGAAACGTCGTCAAACCCTTGGTGTTGGTGCTGGTAGTTTTGATCACTTTCCTTATTACCCTTATTCAACACTTTCTAATTTCTATGAAGGATCCTTTAATAATAATGCACTTGGGGTTCGAAGGGACTCCACGATTCACAAGAAGCCTTTCTATCCTTCTTGGTACTCCACTAGTTCCATGTATGGTCACGCTTGGTCAAATCAGGGTCAGAGAATTCTAAACTCTTCAGCACTTGGTGGCTTTGGAATTCTGAGAAGTGGTGCAACTCCAAGTTCAAGGCTAGAGGATGATAATGGTACCGCTAGAAGACTTCCTCTTTCAGCACTAAACGATTGTTTCAATTTTTGA 678 0.4248 MKLSEIGLKPELDQASSSKPLALLDLLKLSNGDKVAAPEPKVELDLFNPSGNNVVGSSNSRVHDTEGIEENENSKTEAKSFSCNFCKRKFSTSQALGGHQKAHKGERAFAKRRQTLGVGAGSFDHFPYYPYSTLSNFYEGSFNNNALGVRRDSTIHKKPFYPSWYSTSSMYGHAWSNQGQRILNSSALGGFGILRSGATPSSRLEDDNGTARRLPLSALNDCFNF 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1689g00001 225 SUPERFAMILY beta-beta-alpha zinc fingers 77 109 IPR036236 -
Gabi1689g00001 225 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Gabi1689g00001 225 MobiDBLite consensus disorder prediction 55 74 - -
Gabi1689g00001 225 Gene3D Classic Zinc Finger 56 118 - -
Gabi1689g00001 225 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 12 192 IPR044246 GO:0009788
Gabi1689g00001 225 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1689g00001 Gabi-Chr1689 404 1081 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1689g00001 62 161 C2H2 Transcription Factor Family AT5G25160 43.564 4.96e-19 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi1689g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1689g00001 - - lang:109326376 163.696