Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1687g00005 ATGGGAAGGGCTCCTTGCTGTGATAAAGCAAACGTCAAGAAAGGTCCATGGTCTCCTGAAGAAGACGCCACACTCAAAGCTTATATCGACCAGTACGGCACTGGTGGCAACTGGATAGCCCTGCCCCAGAAAATAGGCCTCAAAAGATGTGGGAAAAGCTGTCGTCTTAGATGGCTCAACTATCTTCGCCCAAACATTAAACACGGTCGTTTCACAGAAGAAGAAGACAACATAATTTGCAGCCTCTATGTTCGTATCGGTAGCAGGTGGTCTATTATAGCAGCGCAATTACCAGGGCGCACAGATAATGATATAAAGAACTACTGGAACACTAAGCTGAAGAAGAAGCTCCTAACCAAGCAAAGGAAAGAGCAACAGGCTCAAGCTCACCGAGTTTGTAGCCTAAAACATGAGATCAAGAGAGAAAACGAAAATTTGGTGTTACCTTTCCAAGTTATGAGCCAAATTCCTTATTGGTCTGCAGAGCATTCCTTTAGCATTCCATTGGCAAATGTTTCCATCCATGACTATGATCTCAACAATCAAACATCATCATCATCATCATCCTTCAAAAATATGCCATACACTAACGTAGCCACTGCCACCATGAATTCACAATACTCATGTGACCCATCAAGCATATTTCAAGGGTTTGGGAACTTTTTTCCCAGTGATTTGAGTGAGTTGGCCTGTGTGAGTCCGCAACAAGTAGATGGATCAATGCAGGTCTTTCATGGATTGGAGGAGTCCTTTGACATGGGTAATGGTAGCACGAACACGACTTCAACAAAAAGCTCTAGTTGGGGAGATATTAGCTCTTTGATTTACTCACCTCTGGTTTCTGAAAGTGAAGGTTGCCAACAAAGATTGCCTCAACATGTTACTTTCGAGGAGTGCAGGAACTTTGGTATGCAAACACAATAA 924 0.4318 MGRAPCCDKANVKKGPWSPEEDATLKAYIDQYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGRFTEEEDNIICSLYVRIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLTKQRKEQQAQAHRVCSLKHEIKRENENLVLPFQVMSQIPYWSAEHSFSIPLANVSIHDYDLNNQTSSSSSSFKNMPYTNVATATMNSQYSCDPSSIFQGFGNFFPSDLSELACVSPQQVDGSMQVFHGLEESFDMGNGSTNTTSTKSSSWGDISSLIYSPLVSESEGCQQRLPQHVTFEECRNFGMQTQ 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1687g00005 307 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Gabi1687g00005 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gabi1687g00005 307 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Gabi1687g00005 307 PANTHER OS09G0431300 PROTEIN 1 234 - -
Gabi1687g00005 307 FunFam Transcription factor RAX3 7 68 - -
Gabi1687g00005 307 Gene3D - 70 143 - -
Gabi1687g00005 307 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gabi1687g00005 307 CDD SANT 70 110 IPR001005 -
Gabi1687g00005 307 CDD SANT 16 62 IPR001005 -
Gabi1687g00005 307 FunFam Transcription factor MYB36 70 140 - -
Gabi1687g00005 307 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gabi1687g00005 307 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Gabi1687g00005 307 Gene3D - 7 68 - -
Gabi1687g00005 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Gabi1687g00005 307 SMART sant 13 64 IPR001005 -
Gabi1687g00005 307 SMART sant 67 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1687g00005 Gabi-Chr1687 86329 87623 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1687g00005 1 277 MYB Transcription Factor Family AT3G49690 48.562 2.54e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi1687g00005 Myb_DNA-binding 5.2e-13 CL0123