Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1686g00001 ATGGCTTCATCATCCTCATCAAGCAGTTCTTCATCTTCAACGACATCGAAATATGATGTGTTTGTGAGTTTCAGAGGAGAAGACACACGCTACAACTTCACTGATCATCTTTATGCTGCTCTTCAAAGAAAAGGCATTGTTGCCTTCAGAGATGATACAAAGCTCAAGAAAGGCAAATCCATAGCACCTGAGCTCTTACAAGCAATTGAAGGGTCTCAAATTTATATTGTTGTCTTCTCAAAGAACTATGCTTCCTCAACATGGTGCTTGCGAGAACTCACTAAGATCCTCGATTGCGTTCAAGTATCAAGAAAATATATTCTGCCTATTTTCTATGATGTTGATCCATCTGAGGTGAGAAAACAAAATGAGGGTTACGAGAAAGCATTTGGTGAACATGAAGAAAGATTCAAAGAAGATTCAGAGATGATGGAGGAAGTGAAAAGATGGAGAATTGCTCTGAAAGAAATAGCCAATCTCTCTGGTTGGGATGTACGGTATAAGCCACAAAATACAGAGATTGAAAAAATTGTTAAAGAGATAATAAGTATATTGGCTCACAATTTTTCAAGTCTTCCAAATGATCTAGTTGGGATGCAATCTCCTGCAGAAGAATTAGAAAAGCTTCTAGCTTTAAGCTCAGTTAATGCGGTTAGGGTTGTAGGAATTTGTGGGATGGGTGGAGCAGGAAAGACAACTCTTGCTACAGTGTTGTGGGATAAAATATCTCATCAATTTGATGCTTGTTGTTTTATTGTTGATGTATGCAAGTCTGATGTCATTGATACACAAAAGCAACTTCTACAGCAAGCTCTAAATAAAGAAAACCTTCATATATTTAATCCTTTTTTGGCAGCTGATTTGATACGTCGTAGGTTACGTTATGTAAGGGCCTTTATAGTTCTTGATAATGTTGATCAAGTTGAACAATTGGAGAAACTAGGCGTGAATCGTGAATGGTTAGGTGCAGGGAGCAGAATCATCATAACTTCTAGAGACTTGCATATCCTAAGAAAGTATGGAGTGGATGATGTTTACACCGTTAAACTCTTGAATGCTGACAATGCTCTTCAATTGTTTAGTAGAAAAGCTTTCAATTGTGATAATATTGGGAGAGATTACAAAGTCTTATCATATGAAGTACTAGAATATGCGAAGGGCCTTCCATTGGCAATTAAAGTATTGGGCTCATTTTTGTTTGGTCGAGATATCCATGAGTGGAGAAGTGCATTGGCTAGATTGAGAGAAAATCCAAGCAAAGATATCATGGATGTGCTCCGAATTAGTTATGATGGATTGGAAGAAATGGAGAAAGAAATATTTCTGGATATCGTTTGTTTCTTCAATGGGCACAAGCTGCTTAATGTTGAGAAATATAATAGCCCATATTAA 1392 0.3714 MASSSSSSSSSSSTTSKYDVFVSFRGEDTRYNFTDHLYAALQRKGIVAFRDDTKLKKGKSIAPELLQAIEGSQIYIVVFSKNYASSTWCLRELTKILDCVQVSRKYILPIFYDVDPSEVRKQNEGYEKAFGEHEERFKEDSEMMEEVKRWRIALKEIANLSGWDVRYKPQNTEIEKIVKEIISILAHNFSSLPNDLVGMQSPAEELEKLLALSSVNAVRVVGICGMGGAGKTTLATVLWDKISHQFDACCFIVDVCKSDVIDTQKQLLQQALNKENLHIFNPFLAADLIRRRLRYVRAFIVLDNVDQVEQLEKLGVNREWLGAGSRIIITSRDLHILRKYGVDDVYTVKLLNADNALQLFSRKAFNCDNIGRDYKVLSYEVLEYAKGLPLAIKVLGSFLFGRDIHEWRSALARLRENPSKDIMDVLRISYDGLEEMEKEIFLDIVCFFNGHKLLNVEKYNSPY 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1686g00001 463 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 163 IPR035897 -
Gabi1686g00001 463 Pfam NB-ARC domain 216 422 IPR002182 GO:0043531
Gabi1686g00001 463 FunFam Disease resistance protein (TIR-NBS-LRR class) 352 434 - -
Gabi1686g00001 463 Gene3D - 10 183 IPR035897 -
Gabi1686g00001 463 Gene3D - 350 434 IPR042197 -
Gabi1686g00001 463 ProSiteProfiles TIR domain profile. 16 185 IPR000157 GO:0007165
Gabi1686g00001 463 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 444 IPR027417 -
Gabi1686g00001 463 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 187 - -
Gabi1686g00001 463 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 453 IPR044974 GO:0006952
Gabi1686g00001 463 SMART till_3 17 160 IPR000157 GO:0007165
Gabi1686g00001 463 Pfam TIR domain 17 183 IPR000157 GO:0007165
Gabi1686g00001 463 PRINTS Disease resistance protein signature 292 306 - -
Gabi1686g00001 463 PRINTS Disease resistance protein signature 385 399 - -
Gabi1686g00001 463 PRINTS Disease resistance protein signature 220 235 - -
Gabi1686g00001 463 Gene3D - 184 346 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1686g00001 Gabi-Chr1686 7722 9407 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1686g00001 13 449 WRKY Transcription Factor Family AT4G12020 27.602 2.75e-44 164