Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1683g00003 ATGAGCTTACAAGAGCTAGACCAACGGAAGGATAGGTCCAAAGTTCCTCGTCAGGAATGGGTTCCTAGAGCCACAGCCACCGCCGTCTCCACCACCAATGCCGGCCGGCAGTTATATAAGGATGGTGATGCTGGTAGCTCTAATCCAACGAGTCGGCATAGAAGGAGTTACATGAGTCGTCCTATTCCCATGAATCATGTGGGGAAGGGATTGAATTTGAAAGACCATGACTTGCCTCAGCTGCTGCAAGAGATTCAGGACAAGCTCATGAAAGGCGTTGTTGAATGCATGATTTGCTATGACACCGTCCGGAGGTCTGCACCTATATGGTCTTGCTCCAGTTGCTACTCTATCTTTCACCTTAATTGCATAAAGAAGTGGTCTCGGGCACCCGTTTCCAATGATTTGTCTGCACAGAAGAATCAAGGGTTTAATTGGCGGTGCCCTGGTTGTCAGTCTGTGCAGCTCATATCATCCAAGGAGACTAGGTATCTTTGCTTCTGTGGAAAGAGGCCAGACCCACCATCTGATTTGTATCTCACGCCACATTCCTGTGGAGAACCATGTGGAAAGCCTCTTGAGAAGGAGCTCTTGGTTACTGGAGGGAATAAGGATGATCTTTGCCCTCATGTTTGTGTCTTGCAATGCCATCCGGGTCCATGCCCTCCATGCAAAGCATTTGCCCCACCACGTTTGTGTCCTTGTGGGAAGAAAAATATTACCACTCGTTGCTCTGACCGCCAGTCTGTTATTACTTGTGGCCAGCACTGTGAAAAGCTTCTTGAATGTGGCCGTCATCGTTGTGAGCGAATCTGTCATCTGGGTCCTTGTGATCCTTGTCAGGTTCCAATCAATGCCTCTTGCTTTTGCAGTAAAAAGATGGAGGTTATTCTTTGTGGGGACATGGCTGTGAAGGGTGAAATCAAAGCAGAAGGTGGAGTTTTTTCTTGTGATTCCAATTGTGGAAAGAAACTTGGTTGTGGTAATCATATCTGTATTCAGACTTGTCATCCAGGCAGCTGTGGGGAGTGTGAATTGTTACCAAGCCGGATTAAGACATGCTTTTGTGGGAAAACTAGATTGGAGGAGGAACGGCAGAGTTGTTTAGACTCAATACCTACCTGTTCACACGTATGTGGTAAGTCCCTTCCATGCGGCATGCATCATTGCGAAGAGGCATGCCATGCTGGGGATTGTTCTCCTTGTTTGGTTCTAGTCTCCCATAAGTGTCGATGTGGTTCAACTTCCCGAACTGTGGAGTGCTACAAGGCAATGATGGAGAATGAGAAATTTACTTGTGAAAAGCCTTGTGGGCATAAAAAGAATTGTGGAAGGCATCGATGTAGTGAACGTTGTTGTCCACTTTCTAATCCGAATAATAATCTAAATGCAGATTGGGATCCACACTTTTGTTCCATGCCATGTGGAAAGAAGTTAAGGTGCGGGCAGCATGGCTGTGAATCCACGTGTCATAGTGGTCATTGTCCACCTTGTCTTGAAACTATATTCACTGATTTGACATGTGCTTGTGGCAGGACTTCAATCCCTCCTCCACAGCCTTGTGGTACACCGCTTCCCTCATGTCAGCTTCCATGTTCAGTTCCTCAACCTTGTGGTCATCCAGCCTCCCACAGCTGCCATTCTGGAGATTGCACTCCTTGTTCAGTGCTTGTAGCAAAAGAATGTATTGGTGGGCATGTTGTTCTTAGGAACATACCTTGTGGTTCAAAACATAGTAGATGTAATAATCTCTGTGGGAAGACCAGACAATGTGGTTTACATGCTTGTGGCAGAACATGTCACCCCCCACCTTGTGATAATCCATATGTTGTGCATGGTTTCCGAGCTTCTTGTGGGCAAACATGTGGTGCTCCAAAAAGAGACTGCCGACATACATGTACAGCTCCTTGTCACCCTTCATCTCCATGTCCAGACATACTATGTGAATTCCCTGTTACAATTGCTTGTTCTTGTGGCAGAATAACAGCTAACGTTCCTTGTGGTGTTAATTATAACGCTGATACCATACATGAAGCTTCCAATATTCAGAAGTTGCCAGTGCTGCTTCAATCAGTGGATGCAAATGTCAAAAAAATTCCCCTTGGACAAAGAAAGCTGATGTGTAATGATGAGTGTGCTCAGTTGGAGCGAAAAAGGATTCTTGCAGATGCTTTTGAGATTACCCCTCCAAATCTGGATTCTCTCCATTTTGGTGATAATTCTATTGCTTCTGAATTTCTTGCTGATCTGTTAAGACGTGATCCTAAATGGGTTTTATCTGTTGAGGAGAGATGCAAATGTTTAGTGCTGGGCAAGAGTAGAGGAACTACACATGGTCTAAAAGTCCATGTTTTCTGTCCTATGCTAAAGGATAAGAGAGATGCAGTGAGGGTGATTGCTGAGAGATGGAAGCTTGCAGTGAACGCAGCTGGTTGGGAGCCAAAGCATTTTATAGTTGTTCATGTTACCTCAAAATCAAGAGCCCCTGCTCGTGTGCTAGGAGTTAAGGGTACTACAACTGTGCATGTTCCCCTTCCTCCTGCATTTGATCCTTTGGTAGATATGGACCCTCGGCTTGTTGTCTCCTTTTCAGATTTGCCAAGGGATGCAGATATTAGTGCATTGGTGTTGAGATTTGGGGGTGAGTGTGAACTTGTTTGGTTAAATGACAAAAATGCATTGGCTGTTTTTAATGATCCTGCGCGAGCTGCAGCTGCAACAAGAAGGTTGGATCATGGAACTGTTTATCAGGGAGCTGTTGTGCTTGTTCCTAATGGAGGGGCATCTGTGGCATCTTCAGCTACCAATGCTTGGGGAGGAGCTGGGATAATGAAAGAAGGAGGAGCAGTGGCAGTATTAAATGGTAATCCGTGGAAAAAGGGTGTTGTTCGAGAGCCAGGTTGGAGAGAAGATTCTTGGGGTGATGAGGAGTGGGCTCCTGGTTTTGCTTATGTCGATTCGTCGTCTATTAGGAAGAAAGAAGACCCAATACCCGCTTCATTAAATCCTTGGAGTGTCTTAGATCAAGAATTGTCTTCGAGTTCATCTGTTGAAGCCGTTAAAATTGAAGCTTCTACTAAACGCTTTGAAAGTAGTGTCGTCGAAATGTTGGAGCCTCGTGATAGTGGTTCAAATCTAGAAGGGCAGGATGGAGGAGACTTTGTTGCATCAGAAGTTTCTGATGTAGTAGATGATTGGGAGAAGGCTTATGAATGA 3216 0.4534 MSLQELDQRKDRSKVPRQEWVPRATATAVSTTNAGRQLYKDGDAGSSNPTSRHRRSYMSRPIPMNHVGKGLNLKDHDLPQLLQEIQDKLMKGVVECMICYDTVRRSAPIWSCSSCYSIFHLNCIKKWSRAPVSNDLSAQKNQGFNWRCPGCQSVQLISSKETRYLCFCGKRPDPPSDLYLTPHSCGEPCGKPLEKELLVTGGNKDDLCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKNITTRCSDRQSVITCGQHCEKLLECGRHRCERICHLGPCDPCQVPINASCFCSKKMEVILCGDMAVKGEIKAEGGVFSCDSNCGKKLGCGNHICIQTCHPGSCGECELLPSRIKTCFCGKTRLEEERQSCLDSIPTCSHVCGKSLPCGMHHCEEACHAGDCSPCLVLVSHKCRCGSTSRTVECYKAMMENEKFTCEKPCGHKKNCGRHRCSERCCPLSNPNNNLNADWDPHFCSMPCGKKLRCGQHGCESTCHSGHCPPCLETIFTDLTCACGRTSIPPPQPCGTPLPSCQLPCSVPQPCGHPASHSCHSGDCTPCSVLVAKECIGGHVVLRNIPCGSKHSRCNNLCGKTRQCGLHACGRTCHPPPCDNPYVVHGFRASCGQTCGAPKRDCRHTCTAPCHPSSPCPDILCEFPVTIACSCGRITANVPCGVNYNADTIHEASNIQKLPVLLQSVDANVKKIPLGQRKLMCNDECAQLERKRILADAFEITPPNLDSLHFGDNSIASEFLADLLRRDPKWVLSVEERCKCLVLGKSRGTTHGLKVHVFCPMLKDKRDAVRVIAERWKLAVNAAGWEPKHFIVVHVTSKSRAPARVLGVKGTTTVHVPLPPAFDPLVDMDPRLVVSFSDLPRDADISALVLRFGGECELVWLNDKNALAVFNDPARAAAATRRLDHGTVYQGAVVLVPNGGASVASSATNAWGGAGIMKEGGAVAVLNGNPWKKGVVREPGWREDSWGDEEWAPGFAYVDSSSIRKKEDPIPASLNPWSVLDQELSSSSSVEAVKIEASTKRFESSVVEMLEPRDSGSNLEGQDGGDFVASEVSDVVDDWEKAYE 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1683g00003 1071 Pfam NF-X1 type zinc finger 210 225 IPR000967 GO:0005634|GO:0008270
Gabi1683g00003 1071 Pfam NF-X1 type zinc finger 538 555 IPR000967 GO:0005634|GO:0008270
Gabi1683g00003 1071 Pfam NF-X1 type zinc finger 385 402 IPR000967 GO:0005634|GO:0008270
Gabi1683g00003 1071 Pfam NF-X1 type zinc finger 622 644 IPR000967 GO:0005634|GO:0008270
Gabi1683g00003 1071 Pfam NF-X1 type zinc finger 327 344 IPR000967 GO:0005634|GO:0008270
Gabi1683g00003 1071 Pfam NF-X1 type zinc finger 481 498 IPR000967 GO:0005634|GO:0008270
Gabi1683g00003 1071 Pfam NF-X1 type zinc finger 443 454 IPR000967 GO:0005634|GO:0008270
Gabi1683g00003 1071 Pfam NF-X1 type zinc finger 263 281 IPR000967 GO:0005634|GO:0008270
Gabi1683g00003 1071 Pfam NF-X1 type zinc finger 591 606 IPR000967 GO:0005634|GO:0008270
Gabi1683g00003 1071 MobiDBLite consensus disorder prediction 1038 1058 - -
Gabi1683g00003 1071 ProSiteProfiles Zinc finger PHD-type profile. 93 154 IPR019787 -
Gabi1683g00003 1071 CDD NF-X1-zinc-finger 185 246 - -
Gabi1683g00003 1071 CDD NF-X1-zinc-finger 375 423 - -
Gabi1683g00003 1071 ProSiteProfiles Zinc finger RING-type profile. 96 152 IPR001841 -
Gabi1683g00003 1071 CDD NF-X1-zinc-finger 317 362 - -
Gabi1683g00003 1071 SMART znfxneu3 208 226 IPR000967 GO:0005634|GO:0008270
Gabi1683g00003 1071 SMART znfxneu3 538 556 IPR000967 GO:0005634|GO:0008270
Gabi1683g00003 1071 SMART znfxneu3 591 620 IPR000967 GO:0005634|GO:0008270
Gabi1683g00003 1071 SMART znfxneu3 629 650 IPR000967 GO:0005634|GO:0008270
Gabi1683g00003 1071 SMART znfxneu3 263 282 IPR000967 GO:0005634|GO:0008270
Gabi1683g00003 1071 SMART znfxneu3 385 404 IPR000967 GO:0005634|GO:0008270
Gabi1683g00003 1071 SMART znfxneu3 327 346 IPR000967 GO:0005634|GO:0008270
Gabi1683g00003 1071 SMART znfxneu3 481 500 IPR000967 GO:0005634|GO:0008270
Gabi1683g00003 1071 CDD NF-X1-zinc-finger 253 301 - -
Gabi1683g00003 1071 CDD NF-X1-zinc-finger 618 668 - -
Gabi1683g00003 1071 SUPERFAMILY RING/U-box 95 155 - -
Gabi1683g00003 1071 CDD NF-X1-zinc-finger 528 576 - -
Gabi1683g00003 1071 MobiDBLite consensus disorder prediction 24 55 - -
Gabi1683g00003 1071 MobiDBLite consensus disorder prediction 1 18 - -
Gabi1683g00003 1071 CDD RING-CH-C4HC3_NFX1-like 95 152 - -
Gabi1683g00003 1071 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 57 976 IPR034078 GO:0003700
Gabi1683g00003 1071 MobiDBLite consensus disorder prediction 1 62 - -
Gabi1683g00003 1071 CDD NF-X1-zinc-finger 471 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1683g00003 Gabi-Chr1683 33656 36871 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Gabi1683g00003 zf-NF-X1 87 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1683g00003 K12236 - gmx:106799700 1785