Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1680g00023 ATGGCGACGCCGTTAACGGGGCCGCAGCACTTGGACGGAGGAGGAGGAGTGGCGGTGCTGTCGAATCCCGTGAAGAAGGTCGATTCTTCCGCCAATGGTGGTGGCGGCTTCAATCGCTCCCTATTGGAATCGCCTATTCGGATTTTCTCTTTCTTCCACAAGTCGATTCGGAACGAGCTCGATGCACTGCACCGATTGGCCATGGCTTTCGCCACCGGAAACCGCTCCGACATTCGACCCCTCTCCGAACGCTACCATTTCCTCAGATCGATGTACAGGCACCACTGCAATGCCGAAGATGAGGTGGTTTTTCCAGCTCTAGATATACGAGTGAAGAATGTAGCACAGACATATTCTCTAGAACACGAGGGTGAAAGCAATCTTTTTGATCATCTATTTGAGCTGTTAAACTCTTCCATCCATACTGATGAAAATTTCCCAAAGGAGTTAGCATCCTGCACTGGAGCTTTGCAGACATCTGTCAGTCAACACATGGCTAAGGAAGAGGAGCAGGTATTTCCGCTGCTTATTGAGAAGTTCTCTCTTGAGGAACAGGCATCTTTAGTTTGGCAGTTTCTTTGCAGTATTCCTGTGAATATGATGGTAGAATTTCTTCCATGGCTTTCAACATCTATTTCACCTGATGAATCTCAGGATTTACGGAAGTGCTTAAGCAAGATAGTGCCGGAGGAAAAACTTCTTCAGAAGGTTATTTTCACCTGGATGGAAGGGAGAAGTAGTGCTAACACAGTTGAAAATTGTGTAGATCATTCTCAGGTTCGATGTAGTTCTAAGCCACTAACCCATCAGATTGGGAAAGTAAATTGTGCTTGTGAGTCATCTGCAACTGGGAAAAGGAAATATTCTGGATCTATCCTAGATGTTTCTGATAACACAGGAAGACATCCTATAGATGAAATATTGCTTTGGCATAATGCAATAAAAAAAGAGTTAAATGAGATAGCAGCGGAGACCAGAAAGATACAGCTCTCAGGAGATTTTACTAATCTGTCAGCTTTTAATGAAAGGTTGCAATTCATTGCTGAAGTTTGCATATTTCACAGTATTGCTGAGGACAAGGTTATTTTTCCAGCAGTAGATGGAGAGTTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGAATTCAGGTCTTTGATTGAAAGTATTCAAAGTGAAGAAGCAACATCTAATTCGGAAGCTGAATTTTATTCCAAGTTGTGCTCACATGCTGATCATATAATGGAAACCATACAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCACGGAAGCACTTTAGCTTCAAAAGGCAACGTGAACTTCTGTATCAAAGCTTGTGCATGATGCCGTTGAAATTGATTGAGCGTGTCCTGCCCTGGTTGGTTGGATCATTAACTGAAGATGAAGCAAAGATGTTTGTGAAAAATATGCAGTTGGCAGCTCCAGCAACAGACTCTGCTTTAGTCACGCTCTTCTGTGGTTGGACTTGCAAGGCTCGTAATGTTGGACTGTGTTTGTCTTCAAGAGCATCAGGTTGCTGTCCTGCTCAGAGACTTACTGATAACGAAGAAAATATTGTTCGGCCTTCTTGTGCTTCTGCATTATCTGGTAGAGATTGCTCAGTTTTAGCTGAATCAGATGGAACTCAAAGATCAGTCAAGCGAAACATATTGCAGTTGCACAAGAATGGAGAAGTCCCTAAAACTTCAGAAAATGAAAGCATCCTGACACAATGTTGTAGTGCCTGGTCTTGTTGTGTGCCAGCTTTAGGTGTCAACGGTAACAATTTGGGGCTGAGCTCACTTTCTACCACCAAGTCCTTACGCTCCTTGTCTTTCACGTCTTCTGCCCCATCCCTGAATTCTAGTCTTTTCATATGGGAAACAGACAGTAGCTCATGTGATGTTGGCTCTGCAGAAAGACCAATTGATACCATATTTAAATTCCATAAAGCTATACGCAAAGACTTGGAGTATTTAGACGTTGAATCTGGAAAACTTTGTGATGGTGATGAAACAATTATTCGGCAATTTAGTGGAAGATTTCGTCTTTTGTGGGGTTTATATAGAGCTCATAGTAATGCTGAAGATGATATTGTATTTCCTGCATTGGAATCCAAAGAGACGCTTCATAATGTGAGCCATTCTTACACCCTGGACCATAAGCAGGAAGAAAAATTATTTGAAGGTATTTCTTTAGTTCTTTCTGAGCTTTCTGTCCTTCATGAAGCCTTGCAGAGGACCCATATGTCAGAGGATTTAAGTGAACATAATTTTGGAATTTCTGATGTCAATGGTAGTGATAATATCAGAAAGTATAATGAGCTTGCAACCAAGCTTCAAGGGATGTGCAAATCTATAAGAGTAGCCCTGGATCAGCATATTTTCAGGGAAGAGCTAGAGCTTTGGCCATTGTTTGGGAAACATTTCACTGTGGAAGAACAAGACAAGATAGTGGGCCGGATAATTGGAACTACAGGTGCTGAAGTTCTCCAATCAATGTTACCATGGGTAACTTCTGCACTTACAGAGGATGAACAGAACAAAATGATGGATACATGGAAACAGGCAACTAAGAACACTATGTTCAATGAATGGCTAAATGAATGCTTAAAAGAGAGTCCAGCATCTATATCAGAGACAGAAACATCTGAGCGTAGCACTTGTCAAAGAGGTGCTGACTATCAAGAAAGCTTGAACCTGAATGATCAGATGTTCAAGCCAGGTTGGAAAGATATATTCCGCATGAATCAAAATGAACTGGAGTCAGAAATCCGGAAGGTTTATCGTGACTCAACTCTTGATCCAAGGAGAAAGGCATATCTTATGCAGAATCTAATGACAAGTCGCTGGATAGCTGCCCAACAGAAGTTACCTAAAACTCTATCCGGGGAATCATCTAATAAACAAATAGAAGGATGCTCACCATCATTTCGGGACCCTGAGAAACAAGTATTTGGTTGTGAGCACTATAAGAGAAATTGCAAGCTTCGAGCTGTTTGTTGTGGAAAGTTATTTACATGCAGATTTTGCCATGACAATGTGAGCGATCATTCAATGGATAGAAAAGCAACATTGGAAATGATGTGTATGCACTGCATGACTATACAGCCTGTTGGGCCTATATGCATGTCACCTTCATGTCACGGACTTTCGATGGCAAAATACTATTGCAACATATGCAAATTTTTTGACGATGAAAGGAATGTTTATCATTGCCCATTTTGCAACATATGCCGCGTTGGACTAGGGCTTGGGATTGATTATTTTCATTGTATGAAATGCAATTGTTGCCTGGGGATAAAATCAGCGTCTCACAAGTGCCTGGAGAAAGGTTTAGAAATAAACTGCCCAATTTGCTGCGATGACTTGTTCACATCAAGTGCAACAGTCAGAGCTCTACCTTGCGGGCATTACATGCATTCATCTTGCTTTCAGGCGTACACTTGTAGTCACTACACCTGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCTTTATTGGCTGCTGAGGAGCTTCCTGAAGAGTACAGGGACCGGCATCAGGATATACTCTGCCATGACTGTGATCGAAAGGGCACCTCAGGCTTCCACTGGCTATATCACAAATGTGAATTTTGTGGCTCATACAATACCCGGGTGATCAAGAGTGAGGCTACAAATTCCACCTGCCCTTAG 3723 0.4212 MATPLTGPQHLDGGGGVAVLSNPVKKVDSSANGGGGFNRSLLESPIRIFSFFHKSIRNELDALHRLAMAFATGNRSDIRPLSERYHFLRSMYRHHCNAEDEVVFPALDIRVKNVAQTYSLEHEGESNLFDHLFELLNSSIHTDENFPKELASCTGALQTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMVEFLPWLSTSISPDESQDLRKCLSKIVPEEKLLQKVIFTWMEGRSSANTVENCVDHSQVRCSSKPLTHQIGKVNCACESSATGKRKYSGSILDVSDNTGRHPIDEILLWHNAIKKELNEIAAETRKIQLSGDFTNLSAFNERLQFIAEVCIFHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNEFRSLIESIQSEEATSNSEAEFYSKLCSHADHIMETIQRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLVGSLTEDEAKMFVKNMQLAAPATDSALVTLFCGWTCKARNVGLCLSSRASGCCPAQRLTDNEENIVRPSCASALSGRDCSVLAESDGTQRSVKRNILQLHKNGEVPKTSENESILTQCCSAWSCCVPALGVNGNNLGLSSLSTTKSLRSLSFTSSAPSLNSSLFIWETDSSSCDVGSAERPIDTIFKFHKAIRKDLEYLDVESGKLCDGDETIIRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEGISLVLSELSVLHEALQRTHMSEDLSEHNFGISDVNGSDNIRKYNELATKLQGMCKSIRVALDQHIFREELELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTEDEQNKMMDTWKQATKNTMFNEWLNECLKESPASISETETSERSTCQRGADYQESLNLNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLMQNLMTSRWIAAQQKLPKTLSGESSNKQIEGCSPSFRDPEKQVFGCEHYKRNCKLRAVCCGKLFTCRFCHDNVSDHSMDRKATLEMMCMHCMTIQPVGPICMSPSCHGLSMAKYYCNICKFFDDERNVYHCPFCNICRVGLGLGIDYFHCMKCNCCLGIKSASHKCLEKGLEINCPICCDDLFTSSATVRALPCGHYMHSSCFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRHQDILCHDCDRKGTSGFHWLYHKCEFCGSYNTRVIKSEATNSTCP 1240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1680g00023 1240 Pfam Ring finger domain 1123 1165 IPR001841 -
Gabi1680g00023 1240 Pfam Hemerythrin HHE cation binding domain 302 436 IPR012312 -
Gabi1680g00023 1240 Pfam Hemerythrin HHE cation binding domain 649 812 IPR012312 -
Gabi1680g00023 1240 Pfam Hemerythrin HHE cation binding domain 45 176 IPR012312 -
Gabi1680g00023 1240 CDD Hr-like 305 434 - -
Gabi1680g00023 1240 ProSiteProfiles Zinc finger RING-type profile. 1124 1166 IPR001841 -
Gabi1680g00023 1240 Gene3D nmb1532 protein domain like 645 888 - -
Gabi1680g00023 1240 ProSiteProfiles Zinc finger CTCHY-type profile. 1060 1123 IPR017921 -
Gabi1680g00023 1240 FunFam Zinc finger protein-related isoform 1 1119 1168 - -
Gabi1680g00023 1240 Pfam Zinc-ribbon 1171 1228 IPR039512 -
Gabi1680g00023 1240 ProSiteProfiles Zinc finger CHY-type profile. 988 1057 IPR008913 GO:0008270
Gabi1680g00023 1240 SUPERFAMILY RING/U-box 1121 1176 - -
Gabi1680g00023 1240 CDD Hr-like 651 811 - -
Gabi1680g00023 1240 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 692 1236 - -
Gabi1680g00023 1240 SMART ring_2 1124 1165 IPR001841 -
Gabi1680g00023 1240 Pfam CHY zinc finger 995 1070 IPR008913 GO:0008270
Gabi1680g00023 1240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1119 1168 IPR013083 -
Gabi1680g00023 1240 SUPERFAMILY Zinc hairpin stack 1061 1117 IPR037275 -
Gabi1680g00023 1240 CDD Hr-like 48 174 - -
Gabi1680g00023 1240 Gene3D - 1195 1236 - -
Gabi1680g00023 1240 Gene3D nmb1532 protein domain like 43 194 - -
Gabi1680g00023 1240 Gene3D nmb1532 protein domain like 305 452 - -
Gabi1680g00023 1240 CDD RING-H2_Pirh2-like 1123 1166 - -
Gabi1680g00023 1240 SUPERFAMILY CHY zinc finger-like 988 1052 IPR037274 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1680g00023 Gabi-Chr1680 160349 172989 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1680g00023 1 1239 C2H2 Transcription Factor Family AT3G18290 67.251 0.0 1700
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1680g00023 K16276 - gmx:100791354 2227.98