Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1680g00022 ATGGCGACGCCGTTAACGGGGCCGCAGCACTTGGACGGAGGAGGAGGAGTGGCGGTGCTGTCGAATCCCGTGAAGAAGGTCGATTCTTCCGCCAATGGTGGTGGCGGCTTCAATCGCTCCCTATTGGAATCGCCTATTCGGATTTTCTCTTTCTTCCACAAGTCGATTCGGAACGAGCTCGATGCACTGCACCGATTGGCCATGGCTTTCGCCACCGGAAACCGCTCCGACATTCGACCCCTCTCCGAACGCTACCATTTCCTCAGATCGATGTACAGGCACCACTGCAATGCCGAAGATGAGGTGGTTTTTCCAGCTCTAGATATACGAGTGAAGAATGTAGCACAGACATATTCTCTAGAACACGAGGGTGAAAGCAATCTTTTTGATCATCTATTTGAGCTGTTAAACTCTTCCATCCATACTGATGAAAATTTCCCAAAGGAGTTAGCATCCTGCACTGGAGCTTTGCAGACATCTGTCAGTCAACACATGGCTAAGGAAGAGGAGCAGGATTTACGGAAGTGCTTAAGCAAGATAGTGCCGGAGGAAAAACTTCTTCAGAAGGTTATTTTCACCTGGATGGAAGGGAGAAGTAGTGCTAACACAGTTGAAAATTGTGTAGATCATTCTCAGGTTCGATGTAGTTCTAAGCCACTAACCCATCAGATTGGGAAAGTAAATTGTGCTTGTGAGTCATCTGCAACTGGGAAAAGGAAATATTCTGGATCTATCCTAGATGTTTCTGATAACACAGGAAGACATCCTATAGATGAAATATTGCTTTGGCATAATGCAATAAAAAAAGAGTTAAATGAGATAGCAGCGGAGACCAGAAAGATACAGCTCTCAGGAGATTTTACTAATCTGTCAGCTTTTAATGAAAGGTTGCAATTCATTGCTGAAGTTTGCATATTTCACAGTATTGCTGAGGACAAGGTTATTTTTCCAGCAGTAGATGGAGAGTTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGAATTCAGGTCTTTGATTGAAAGTATTCAAAGTGAAGAAGCAACATCTAATTCGGAAGCTGAATTTTATTCCAAGTTGTGCTCACATGCTGATCATATAATGGAAACCATACAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCACGGAAGCACTTTAGCTTCAAAAGGCAACGTGAACTTCTGTATCAAAGCTTGTGCATGATGCCGTTGAAATTGATTGAGCGTGTCCTGCCCTGGTTGGTTGGATCATTAACTGAAGATGAAGCAAAGATGTTTGTGAAAAATATGCAGTTGGCAGCTCCAGCAACAGACTCTGCTTTAGTCACGCTCTTCTGTGGTTGGACTTGCAAGGCTCGTAATGTTGGACTGTGTTTGTCTTCAAGAGCATCAGGTTGCTGTCCTGCTCAGAGACTTACTGATAACGAAGAAAATATTGTTCGGCCTTCTTGTGCTTCTGCATTATCTGGTAGAGATTGCTCAGTTTTAGCTGAATCAGATGGAACTCAAAGATCAGTCAAGCGAAACATATTGCAGTTGCACAAGAATGGAGAAGTCCCTAAAACTTCAGAAAATGAAAGCATCCTGACACAATGTTGTAGTGCCTGGTCTTGTTGTGTGCCAGCTTTAGGTGTCAACGGTAACAATTTGGGGCTGAGCTCACTTTCTACCACCAAGTCCTTACGCTCCTTGTCTTTCACGTCTTCTGCCCCATCCCTGAATTCTAGTCTTTTCATATGGGAAACAGACAGTAGCTCATGTGATGTTGGCTCTGCAGAAAGACCAATTGATACCATATTTAAATTCCATAAAGCTATACGCAAAGACTTGGAGTATTTAGACGTTGAATCTGGAAAACTTTGTGATGGTGATGAAACAATTATTCGGCAATTTAGTGGAAGATTTCGTCTTTTGTGGGGTTTATATAGAGCTCATAGTAATGCTGAAGATGATATTGTATTTCCTGCATTGGAATCCAAAGAGACGCTTCATAATGTGAGCCATTCTTACACCCTGGACCATAAGCAGGAAGAAAAATTATTTGAAGGTATTTCTTTAGTTCTTTCTGAGCTTTCTGTCCTTCATGAAGCCTTGCAGAGGACCCATATGTCAGAGGATTTAAGTGAACATAATTTTGGAATTTCTGATGTCAATGGTAGTGATAATATCAGAAAGTATAATGAGCTTGCAACCAAGCTTCAAGGGATGTGCAAATCTATAAGAGTAGCCCTGGATCAGCATATTTTCAGGGAAGAGCTAGAGCTTTGGCCATTGTTTGGGAAACATTTCACTGTGGAAGAACAAGACAAGATAGTGGGCCGGATAATTGGAACTACAGGTGCTGAAGTTCTCCAATCAATGTTACCATGGGTAACTTCTGCACTTACAGAGGATGAACAGAACAAAATGATGGATACATGGAAACAGGCAACTAAGAACACTATGTTCAATGAATGGCTAAATGAATGCTTAAAAGAGAGTCCAGCATCTATATCAGAGACAGAAACATCTGAGCGTAGCACTTGTCAAAGAGGTGCTGACTATCAAGAAAGCTTGAACCTGAATGATCAGATGTTCAAGCCAGGTTGGAAAGATATATTCCGCATGAATCAAAATGAACTGGAGTCAGAAATCCGGAAGGTTTATCGTGACTCAACTCTTGATCCAAGGAGAAAGGCATATCTTATGCAGAATCTAATGACAAGTCGCTGGATAGCTGCCCAACAGAAGTTACCTAAAACTCTATCCGGGGAATCATCTAATAAACAAATAGAAGGATGCTCACCATCATTTCGGGACCCTGAGAAACAAGTATTTGGTTGTGAGCACTATAAGAGAAATTGCAAGCTTCGAGCTGTTTGTTGTGGAAAGTTATTTACATGCAGATTTTGCCATGACAATGTGAGCGATCATTCAATGGATAGAAAAGCAACATTGGAAATGATGTGTATGCACTGCATGACTATACAGCCTGTTGGGCCTATATGCATGTCACCTTCATGTCACGGACTTTCGATGGCAAAATACTATTGCAACATATGCAAATTTTTTGACGATGAAAGGAATGTTTATCATTGCCCATTTTGCAACATATGCCGCGTTGGACTAGGGCTTGGGATTGATTATTTTCATTGTATGAAATGCAATTGTTGCCTGGGGATAAAATCAGCGTCTCACAAGTGCCTGGAGAAAGGTTTAGAAATAAACTGCCCAATTTGCTGCGATGACTTGTTCACATCAAGTGCAACAGTCAGAGCTCTACCTTGCGGGCATTACATGCATTCATCTTGCTTTCAGGCGTACACTTGTAGTCACTACACCTGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCTTTATTGGCTGCTGAGGAGCTTCCTGAAGAGTACAGGGACCGGCATCAGGATATACTCTGCCATGACTGTGATCGAAAGGGCACCTCAGGCTTCCACTGGCTATATCACAAATGTGAATTTTGTGGCTCATACAATACCCGGGTGATCAAGAGTGAGGCTACAAATTCCACCTGCCCTTAG 3582 0.4224 MATPLTGPQHLDGGGGVAVLSNPVKKVDSSANGGGGFNRSLLESPIRIFSFFHKSIRNELDALHRLAMAFATGNRSDIRPLSERYHFLRSMYRHHCNAEDEVVFPALDIRVKNVAQTYSLEHEGESNLFDHLFELLNSSIHTDENFPKELASCTGALQTSVSQHMAKEEEQDLRKCLSKIVPEEKLLQKVIFTWMEGRSSANTVENCVDHSQVRCSSKPLTHQIGKVNCACESSATGKRKYSGSILDVSDNTGRHPIDEILLWHNAIKKELNEIAAETRKIQLSGDFTNLSAFNERLQFIAEVCIFHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNEFRSLIESIQSEEATSNSEAEFYSKLCSHADHIMETIQRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLVGSLTEDEAKMFVKNMQLAAPATDSALVTLFCGWTCKARNVGLCLSSRASGCCPAQRLTDNEENIVRPSCASALSGRDCSVLAESDGTQRSVKRNILQLHKNGEVPKTSENESILTQCCSAWSCCVPALGVNGNNLGLSSLSTTKSLRSLSFTSSAPSLNSSLFIWETDSSSCDVGSAERPIDTIFKFHKAIRKDLEYLDVESGKLCDGDETIIRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEGISLVLSELSVLHEALQRTHMSEDLSEHNFGISDVNGSDNIRKYNELATKLQGMCKSIRVALDQHIFREELELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTEDEQNKMMDTWKQATKNTMFNEWLNECLKESPASISETETSERSTCQRGADYQESLNLNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLMQNLMTSRWIAAQQKLPKTLSGESSNKQIEGCSPSFRDPEKQVFGCEHYKRNCKLRAVCCGKLFTCRFCHDNVSDHSMDRKATLEMMCMHCMTIQPVGPICMSPSCHGLSMAKYYCNICKFFDDERNVYHCPFCNICRVGLGLGIDYFHCMKCNCCLGIKSASHKCLEKGLEINCPICCDDLFTSSATVRALPCGHYMHSSCFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRHQDILCHDCDRKGTSGFHWLYHKCEFCGSYNTRVIKSEATNSTCP 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1680g00022 1193 ProSiteProfiles Zinc finger RING-type profile. 1077 1119 IPR001841 -
Gabi1680g00022 1193 SUPERFAMILY RING/U-box 1074 1129 - -
Gabi1680g00022 1193 CDD RING-H2_Pirh2-like 1076 1119 - -
Gabi1680g00022 1193 FunFam Zinc finger protein-related isoform 1 1072 1121 - -
Gabi1680g00022 1193 Pfam Hemerythrin HHE cation binding domain 45 171 IPR012312 -
Gabi1680g00022 1193 Pfam Hemerythrin HHE cation binding domain 602 765 IPR012312 -
Gabi1680g00022 1193 Pfam Hemerythrin HHE cation binding domain 255 389 IPR012312 -
Gabi1680g00022 1193 Pfam Zinc-ribbon 1124 1181 IPR039512 -
Gabi1680g00022 1193 Gene3D - 1148 1189 - -
Gabi1680g00022 1193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1070 1121 IPR013083 -
Gabi1680g00022 1193 CDD Hr-like 258 387 - -
Gabi1680g00022 1193 Pfam CHY zinc finger 948 1023 IPR008913 GO:0008270
Gabi1680g00022 1193 SMART ring_2 1077 1118 IPR001841 -
Gabi1680g00022 1193 CDD Hr-like 48 171 - -
Gabi1680g00022 1193 Gene3D nmb1532 protein domain like 598 841 - -
Gabi1680g00022 1193 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 645 1189 - -
Gabi1680g00022 1193 SUPERFAMILY Zinc hairpin stack 1014 1070 IPR037275 -
Gabi1680g00022 1193 ProSiteProfiles Zinc finger CHY-type profile. 941 1010 IPR008913 GO:0008270
Gabi1680g00022 1193 ProSiteProfiles Zinc finger CTCHY-type profile. 1013 1076 IPR017921 -
Gabi1680g00022 1193 SUPERFAMILY CHY zinc finger-like 941 1005 IPR037274 GO:0008270
Gabi1680g00022 1193 CDD Hr-like 604 764 - -
Gabi1680g00022 1193 Gene3D nmb1532 protein domain like 43 193 - -
Gabi1680g00022 1193 Gene3D nmb1532 protein domain like 258 405 - -
Gabi1680g00022 1193 Pfam Ring finger domain 1076 1118 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1680g00022 Gabi-Chr1680 160349 172989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1680g00022 1 1192 C2H2 Transcription Factor Family AT3G18290 64.462 0.0 1604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1680g00022 K16276 - gmx:100791354 2112.42