Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1680g00018 ATGAGGTTCCTGTCCTGGTTGTGCAAGTGCTTGGAGAAGCGTCTGAAGAGGGGCGGCGCAGCCTCCGACGACGGCTGCGGCGACGATGCAAACGATGGCGGCGACACTTGGGACCTCATCTTCCCCCTCCAAACTCTCCAGCTGGCCACCAATTTCTTCTCCGACCTTAACCAGCTCGGTCATGGAGGGTTTGGTCCTGTCTTCAAGGGATTGATGCCAAATGGTCAAGAAGTGGCTGTTAAGAAGCTGTCATTGGCATCTAGGCAAGGAATTAGGGAATTTACCAATGAAGTCAAGCTATTACTAAAACTTCAGCACAAGAACTTGGTTATATTACTGGGTTGTTGTGCAGAAGGACGTGAAAAAATGCTTGTCTATGAGTATCTGCCAAACAAAAGCCTTGATCACTTCCTGTTTGATAAAAGGAAGTCTTCATCTTTGGACTGGACAACACGATTTAGAATAATTACAGGTGTGGCAAGAGGACTTCTCTACCTGCACGAAGAGGCCCCAGAAAGAATTATCCACAGAGACATTAAAGCTAGTAACATATTGCTGGATGAGAAATTAAATCCAAAAATCTCAGACTTTGGCTTGGCAAGGCTGTTTCCTGGGGAGGACACTCATGTGCAGACATTTAGGATTTCCGGTACACATGGTTACATGGCCCCTGAATATGCATTGCGAGGATATCTGTCTGTGAAGACAGATGTTTTCAGTTATGGAGTCCTGGTGTTGGAAATAGTTAGTGGGAGAAAAAACCATGACAAGCAGCTTGGTGCAGAAAAGGCAGATCTCTTGAACTACGCTTGGACGCTTTATCAAGGAGGGAAGATTATGGATTTAATTGACCCAACCCTTGGTAAATACAATGGTGATGAGGCAGCAATGTGCATTCAGCTAGGTTTGTTGTGCTGTCAAGCAAGTATAATCGATAGACCAGACATGAATTCTGTTCATCTCATGCTCTCAAGTGACTCCTTCACATTGCCTAGACCAGGTAAACCAGGAATTCAAGGTCGTGTTGGACATTGGACTACAACCACTACTTCTGCTTTCACCAATACTACTGCTAGTAGTGCAACCAAAGCCTCAGGTGGTAGTAGTTTTGTAGAGGATTATTCTAGAAATTCTATTTCTACTTCTTCTTTTGACGAAGGCAGATGA 1167 0.4473 MRFLSWLCKCLEKRLKRGGAASDDGCGDDANDGGDTWDLIFPLQTLQLATNFFSDLNQLGHGGFGPVFKGLMPNGQEVAVKKLSLASRQGIREFTNEVKLLLKLQHKNLVILLGCCAEGREKMLVYEYLPNKSLDHFLFDKRKSSSLDWTTRFRIITGVARGLLYLHEEAPERIIHRDIKASNILLDEKLNPKISDFGLARLFPGEDTHVQTFRISGTHGYMAPEYALRGYLSVKTDVFSYGVLVLEIVSGRKNHDKQLGAEKADLLNYAWTLYQGGKIMDLIDPTLGKYNGDEAAMCIQLGLLCCQASIIDRPDMNSVHLMLSSDSFTLPRPGKPGIQGRVGHWTTTTTSAFTNTTASSATKASGGSSFVEDYSRNSISTSSFDEGR 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1680g00018 388 FunFam Cysteine-rich receptor-like protein kinase 41 129 329 - -
Gabi1680g00018 388 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 33 128 - -
Gabi1680g00018 388 SMART serkin_6 53 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1680g00018 388 CDD STKc_IRAK 59 323 - -
Gabi1680g00018 388 MobiDBLite consensus disorder prediction 357 388 - -
Gabi1680g00018 388 Gene3D Phosphorylase Kinase; domain 1 34 128 - -
Gabi1680g00018 388 SUPERFAMILY Protein kinase-like (PK-like) 37 350 IPR011009 -
Gabi1680g00018 388 Pfam Protein tyrosine and serine/threonine kinase 57 257 IPR001245 GO:0004672|GO:0006468
Gabi1680g00018 388 Gene3D Transferase(Phosphotransferase) domain 1 129 329 - -
Gabi1680g00018 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Gabi1680g00018 388 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 22 381 - -
Gabi1680g00018 388 ProSiteProfiles Protein kinase domain profile. 53 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1680g00018 Gabi-Chr1680 113843 117210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1680g00018 35 338 Receptor kinase-like Gene Family AT4G21410 54.545 4.99e-110 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1680g00018 PK_Tyr_Ser-Thr 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1680g00018 - - gmx:100790304 628.632