Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1680g00015 ATGTCTATTCCATCAAAGAGTGTTGGCTGTTATAGTGAAAATGATAATGAACTTAGAAGAGGACCTTGGACTCTTGAAGAGGATGATATGCTCATCAAATACATTGCTAATCATGGGGAAGGGAGATGGAATTTGCTGGCTATGAGTTCAGGATTAAGGAGAACAGGAAAGAGTTGCAGATTAAGATGGCTTAATTATCTAAGGCCAGATGTAAAGAGAGGAAATTTTACCACACAAGAGAAGCTTTTAATTTTTGAACTCCACTCAAAGTGGGGTAACAGGTGGTCAAAAATTGCACAACAGTTGCCAGGCCGAACAGACAATGAAATCAAGAACTATTGGAGAACTCGGATTCAGAAACATGCAAGTTCCATTGATAGAACAGGATTTCTAGAAATTGCCAAGCGTTTGCAGATGATAAGATGTCTTCAGAAAGCAAAAGAATCATCTTCTTCAGCAGTGTCAATCCAAAACCAAGCAATTCCTTTGCCTCTTGATGGTGTTTCTCATTACTCAGTGATTGGGACAATACCAACACAAATCGCTTGTCATGGAGCTTGTATGAATGAAGGAGATCCCACTTTTTTGAATCAGCATGAGCACAACTCAGATTCTGACCACAACAATGGTTCATGTATATCCTCTTCAGAATCAGCAAATATCCCAAATATGACTTTGGGATACACTAATAGTCAATTTCAGGCCTTGGATAACAGTGACTTTAGTTCATGTGCATATGATGGTTACCAAGTAAATAACAATAATGCCTATGAAATGGGTGGCTTCAACCTAACAACCACAATGGTCGCTGAGGATCTGGAATTCCCAATGTATGATTGTCAAATGTCAGAAAGCAATTGCCTAAACAAGGAATTTGCATATGGCTGGAACATGGATGAATTATGGCAATTTAGGAATATACAAAAATAA 930 0.3828 MSIPSKSVGCYSENDNELRRGPWTLEEDDMLIKYIANHGEGRWNLLAMSSGLRRTGKSCRLRWLNYLRPDVKRGNFTTQEKLLIFELHSKWGNRWSKIAQQLPGRTDNEIKNYWRTRIQKHASSIDRTGFLEIAKRLQMIRCLQKAKESSSSAVSIQNQAIPLPLDGVSHYSVIGTIPTQIACHGACMNEGDPTFLNQHEHNSDSDHNNGSCISSSESANIPNMTLGYTNSQFQALDNSDFSSCAYDGYQVNNNNAYEMGGFNLTTTMVAEDLEFPMYDCQMSESNCLNKEFAYGWNMDELWQFRNIQK 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1680g00015 309 FunFam Myb transcription factor 20 72 - -
Gabi1680g00015 309 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Gabi1680g00015 309 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Gabi1680g00015 309 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Gabi1680g00015 309 SMART sant 72 120 IPR001005 -
Gabi1680g00015 309 SMART sant 19 69 IPR001005 -
Gabi1680g00015 309 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Gabi1680g00015 309 Gene3D - 75 119 - -
Gabi1680g00015 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 122 IPR017930 -
Gabi1680g00015 309 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 14 214 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gabi1680g00015 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 71 IPR017930 -
Gabi1680g00015 309 CDD SANT 22 67 IPR001005 -
Gabi1680g00015 309 CDD SANT 75 116 IPR001005 -
Gabi1680g00015 309 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Gabi1680g00015 309 Gene3D - 12 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1680g00015 Gabi-Chr1680 103458 104657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1680g00015 15 305 MYB Transcription Factor Family AT1G68320 40.909 8.98e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi1680g00015 Myb_DNA-binding 6.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1680g00015 K09422 - gmx:100804227 418.698