Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1680g00012 ATGGCTGAATTCACAGAAAATTTGCAAAGCTTTAGACCCTCATTTCCTTTCTTAGATGTTGATCCAAGCATGGAACTCCTAAATCAATTCATAGGGATGAACTCACATGTCCTTGACAACTCAAATTTGAACATGCAGAACTTGATGCCTTTCTCCTGTGACAGCTTCTTGGGCCCTCAAGAACATGAGTATCCAGGAAACTTGGAAGAAAGTTTTCCTGGTCTAGTCCATCATGTTAATCACAATGCTGTTCCAGTTTCCCTTCCCATTTTTCCAGCAGAAAATGAAATCCATGAAGGTAAAAAGAGGAAAATAAAGGATACTCCTGAGACCAGTTCAGCAAACTCAACTCCTGCAGTTTCTGAGAATGGAAGCAAGACAAAACAAAGCTCTGGAAGAGGAAAGAGAGTAAAAAGCAATGTAACAGAAGAGGAGAAAGCAAAGGAAGTGGTTCATGTCAGAGCCAGAAGAGGTCAAGCAACTGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAGAAATTAAGGTGCTTACAGAACATAGTTCCAGGATGTTACAAGACCATGGGTATGGCTGTAATGTTGGATGAAATCATAAACTATGTCCAGTCTTTGCAGCATCAAGTGGAGTTCCTTTCCTTGAAACTTACTGCTGCAAGTACCTACTATGACTTCAATTCAGAGACTGATGCTTTAGAAACAATACAGAGAGCAAGGGCATCCGAGGCAAAAGAGTTAGCCAAGTATAAGAGAGAAGGATATGGAGGAGTTTCTTGCTTTCAACCAACTTGGCCCCTTTGA 813 0.4084 MAEFTENLQSFRPSFPFLDVDPSMELLNQFIGMNSHVLDNSNLNMQNLMPFSCDSFLGPQEHEYPGNLEESFPGLVHHVNHNAVPVSLPIFPAENEIHEGKKRKIKDTPETSSANSTPAVSENGSKTKQSSGRGKRVKSNVTEEEKAKEVVHVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTYYDFNSETDALETIQRARASEAKELAKYKREGYGGVSCFQPTWPL 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1680g00012 270 MobiDBLite consensus disorder prediction 137 165 - -
Gabi1680g00012 270 MobiDBLite consensus disorder prediction 100 165 - -
Gabi1680g00012 270 Coils Coil 236 256 - -
Gabi1680g00012 270 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 95 233 IPR024097 GO:0006355
Gabi1680g00012 270 SMART finulus 165 215 IPR011598 GO:0046983
Gabi1680g00012 270 MobiDBLite consensus disorder prediction 110 136 - -
Gabi1680g00012 270 Gene3D - 159 221 IPR036638 GO:0046983
Gabi1680g00012 270 Pfam Helix-loop-helix DNA-binding domain 163 210 IPR011598 GO:0046983
Gabi1680g00012 270 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 226 IPR036638 GO:0046983
Gabi1680g00012 270 CDD bHLH_AtBPE_like 149 234 - -
Gabi1680g00012 270 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 209 IPR011598 GO:0046983
Gabi1680g00012 270 FunFam transcription factor BEE 3-like 156 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1680g00012 Gabi-Chr1680 71270 72924 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1680g00012 81 270 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 56.109 1.18e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi1680g00012 HLH 0.00017 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1680g00012 - - gmx:100806942 462.996