Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1679g00022 ATGGGGCACAGTTCGAAGAAGAAGAAGAAGCATGGAGGAGGAGGAGGAGGAGGGAGTGGACGTAGGAGTAAAGGAAGAGCACCTTCCACAGATCATGCTTCTCAATTCGGCGTCGATGATAACGAGCAGCTTTCCGAAGAGATTACTGCATTATGTGCAATTTTTCAAGAGGACTGCAAGGTTCTTCCTGGATCTCCTCCTCAAGTAGTCATTAAGCTCAGGCCCTACTCAAAGGACATGGGCTATGAAGATGTAGATGTTTCTGCTGCTCTTGTTGTTAGGTACTTACCTGGATATCCCTTCAAGTGTCCAAAGTTGCAGGTTACTCCTGAGAATGGCTTATCTGAAACTGATGCTCATCGTCTTTTGTCTCTCCTCCTTGATCAGGCTAATTTAAATGCTAGGGAGGGACGAGTAATGATCTTTAATTTAGTTGAGGCAGCCCAAGAATTTCTGTCTGGAATTGAGCCAATTGCCAAATCAACTGAATCTAACATTTTACAGTCAACTATGGAAAGCACTGAAGAATCGTTTCTCAAGGATATGTCATCTTCAAATAAGAATAGAACCTTTGTTTATGGTTTCATAGACCTTTTCAGTGGCTATGGAGAGTCATGGACTTGGGGTTTTGGAATGGATGAAATTTCTGGAAAAAATTCTTCTCTTCCTCCCTCGAAGTTAGATTCCTCAAAACCACGTTTTGAGGCCCGGGAAAAGAAATCTGATAGTAAGGAAAAACCGTTAATAATGGAAGAACTTCCTGCCAAACTAGATACTGTTGGAGAAGTGAGCGAAGACAGTAAAAATAGCTTATTTTTGACTCATTCAAGTAGATCTCTGGTGGATGATTTTGCAGGGAATGACAATGAAGGTGAGAAAGAGTATTTTATCGTTGATGAGTATACAACAGACGATAATGAAGGTATGTATGAAAGTGAGTCTTCAGAGTCTTTGTCTTCTCATCACCAACCATCTGAAATAGTTGCAAAGGATCTAATAATGGTTCACATGCTTCGCCTTGTTTGTGCTTCCAAAGGAACACTGGCTGACTCTTTGCCACAAGTAGCAACAGAGTTGTATAATTTAGGGATCTTTTCTGACTCGGCACGTGATATGGCCACTCAACCGCATTCGCTTTTCAACAAAACCTTTGATCATGTTTTCCAGAAACACATGGCTTCATCCAAAACATCTCAATTTTGGAAACCTTCTGATCTTGGAGGCTCAACCCACAGTTCTCGATATTTGAATGATTTTGAGGAGCTACAGTCTCTTGGTCATGGTGGTTTTGGCCATGTTGTGTTGTGCAAAAATAAACTCGATGGAAGGCAGTATGCAGTAAAGAAAATTCGCCTAAAAGACAAAAGCATGCCTGACCGAATATTAAGGGAAGTAGCTACACTTTCTCGTTTACAGCATCAACATGTTGTTCGGTATTATCAGGCATGGTTTGAAACTGGAGTTGCTGATTCTTATGGTGATCCTGCTTGGGGTTCAAGGACTCCAGGGAGCTCTACTTTCAGCTATAAAGCTGCAAGCTCCAACAATGCCTTTGGGCATGAGAATCAGCTTGAATCAACATACCTTTATATACAAATGGAGTACTGTCCTGGGACTCTTCGCCAGGTGTTTGAATCATATAATAATTTTGACAAAGAATCGGCATGGCATTTGTTTCGCCAAATAGTGGAAGGCTTGGTACACATACATGGGCAAGGGATTATTCATCGGGACTTAACACCAAGTAACATATTCTTTGATGCACGCAATGATATTAAAATTGGTGATTTTGGTCTCGCCAAGTTCTTGAAGTTGGAGCAACTGGATCAAGATCTGAACCATCCTGCTGTTACGACTGGAGTTTCCATTGATGGCACTGGACAAGTTGGGACGTACTTCTATACAGCTCCTGAAATTGAGCAAGGATGGCCCAAGATTGATGAAAAGGCTGATATGTACAGCTTAGGAGTGGTTTTCTTTGAGCTTTGGCACCCATTTGGAACAGCAATGGAGAGACATGTTGTTTTATCTGACCTGAAACAAAAAGGGGAGCTTCCTCCTGCTTGGGTTGCTGAGTTTCCAGAACAGGAATCGTTATTGCGGCGGTTAATGTCTCCGGGTCCTTCAGATCGCCCTTCTGCCACAGAACTTAAAAATGCACTTCCCCCGCGAATGGAATCCGAATTATTGGATGATATCCTACGAACAATGCAGAAATCAGAGGATACAAGCATATATGATAAAGTTTTAAATGCCATCTTTGATGAAGAGATGTTAAGCACAAAACACATTCGCCATGTTGGTGGATTGGGGTCAGTTGGAGAAAACAGTTCATCCATTCTGTACCCAGATTTTCAAACTGAGGTTCGAGATTATGTTGCAGATGTCAACAGGGAAATTTTCAGGCAGCATTGCGCAAAGCACCTAGAAATTTTAACAATGCGATTATTGGATGGTTGTCAACAGTTTAATAGAAATGCAGTTAAACTTCTGACCCATGGAGGAGACATGCTTGAACTTTGCCACGAGCTGCGTTTGCCTTTTGTGAACTGGATTATATCTAACCAGAAATCTTCGTTCAAACGATATGAGATATCTTGTGTCTACAGAAGAGCAATTGGTCATTCATCTCCAAACCGCTTCCTTCAGGGAGATTTTGACATTATTGGTGGTACCTCAGCATTGACAGAGGCAGAGGTCATAAAGGTCACAAGGGACATAGTCACTTGTTTTTTCCATTCAGACTCATGTGACATTCATCTAAACCACGGTGACCTCCTGGATGCAATTTGGTCATGGATTGGAGTCAAGGTAGAACACAGACTTAAAGTAGCAGAGCTTCTTTCAATGATGGGTTCTTTGCGTCCACAATCCTCAGAAAGGAAATCAAAATGGGTAGTGATAAGGCGGCAGCTTTTGCAGGAACTGAATTTAGCAGAAGCTATGGTAAATAGGTTGCAGACAGTAGGTTTAAGATTCTGTGGATCTGCAGATCAGGCACTTCCCAGATTAAGAGGAGCTCTTCCATCAGATAAACGTACGTTCAAGGCACTTGATGAATTGTCTGAGCTTGTCAGTCTCTTGAGAATTTGGAGGATTGACAAAAATGTCTATATAGATGCATTAATGCCGCCAACTGAAAGTTATCATAGAGATTTGTTTTTTCAGGTATACTTGAGGAAGGAGAACAGTCCTGGGTCGCTTTCTGAAGGTGTCTTGCTGGCTGTTGGTGGTCGATATGACTTTTTGCTTCATCAGTTGTGGAGTCAAGACTATAAAGGAAATTCCCCCACTGGGGTGGGGAGTAGCCTTGCAATAGAGACAATAATTCAGAATTGTCCTGTGGATTTTAAGCCCATTAGAAATGAAGCCAGCACCAGTATTCTTGTCTGTTCAAGAGGAGGAGGTGGTCTGTTGGAGGAGCGCATGGAACTAGTTGCTGAACTATGGGAGGAGAACTTTAAGGCTGAATTTGTTCCCACCCCTGATCCAAGTTTTACAGAGCAGTATGAGTATGCTAACGAACATGATATCAAATGTCTTGTCACCATCACAGATACAGGTTTCTCCCTGACAGATTCTGTTAAGGTTCGACACCTTGAACTTAAGAAGGAGAAAAACGTCGAAAGACAAAACCTAGTCAAGTTTCTATGGGATGCTATGGCAACACAGTTTAGAAACCCCGCCATTTGGATTTGA 3699 0.4201 MGHSSKKKKKHGGGGGGGSGRRSKGRAPSTDHASQFGVDDNEQLSEEITALCAIFQEDCKVLPGSPPQVVIKLRPYSKDMGYEDVDVSAALVVRYLPGYPFKCPKLQVTPENGLSETDAHRLLSLLLDQANLNAREGRVMIFNLVEAAQEFLSGIEPIAKSTESNILQSTMESTEESFLKDMSSSNKNRTFVYGFIDLFSGYGESWTWGFGMDEISGKNSSLPPSKLDSSKPRFEAREKKSDSKEKPLIMEELPAKLDTVGEVSEDSKNSLFLTHSSRSLVDDFAGNDNEGEKEYFIVDEYTTDDNEGMYESESSESLSSHHQPSEIVAKDLIMVHMLRLVCASKGTLADSLPQVATELYNLGIFSDSARDMATQPHSLFNKTFDHVFQKHMASSKTSQFWKPSDLGGSTHSSRYLNDFEELQSLGHGGFGHVVLCKNKLDGRQYAVKKIRLKDKSMPDRILREVATLSRLQHQHVVRYYQAWFETGVADSYGDPAWGSRTPGSSTFSYKAASSNNAFGHENQLESTYLYIQMEYCPGTLRQVFESYNNFDKESAWHLFRQIVEGLVHIHGQGIIHRDLTPSNIFFDARNDIKIGDFGLAKFLKLEQLDQDLNHPAVTTGVSIDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGVVFFELWHPFGTAMERHVVLSDLKQKGELPPAWVAEFPEQESLLRRLMSPGPSDRPSATELKNALPPRMESELLDDILRTMQKSEDTSIYDKVLNAIFDEEMLSTKHIRHVGGLGSVGENSSSILYPDFQTEVRDYVADVNREIFRQHCAKHLEILTMRLLDGCQQFNRNAVKLLTHGGDMLELCHELRLPFVNWIISNQKSSFKRYEISCVYRRAIGHSSPNRFLQGDFDIIGGTSALTEAEVIKVTRDIVTCFFHSDSCDIHLNHGDLLDAIWSWIGVKVEHRLKVAELLSMMGSLRPQSSERKSKWVVIRRQLLQELNLAEAMVNRLQTVGLRFCGSADQALPRLRGALPSDKRTFKALDELSELVSLLRIWRIDKNVYIDALMPPTESYHRDLFFQVYLRKENSPGSLSEGVLLAVGGRYDFLLHQLWSQDYKGNSPTGVGSSLAIETIIQNCPVDFKPIRNEASTSILVCSRGGGGLLEERMELVAELWEENFKAEFVPTPDPSFTEQYEYANEHDIKCLVTITDTGFSLTDSVKVRHLELKKEKNVERQNLVKFLWDAMATQFRNPAIWI 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1679g00022 1232 MobiDBLite consensus disorder prediction 1 15 - -
Gabi1679g00022 1232 ProSitePatterns Protein kinases ATP-binding region signature. 425 449 IPR017441 GO:0005524
Gabi1679g00022 1232 Pfam Protein kinase domain 419 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1679g00022 1232 Gene3D - 1123 1221 IPR036621 -
Gabi1679g00022 1232 ProSiteProfiles Protein kinase domain profile. 419 725 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1679g00022 1232 MobiDBLite consensus disorder prediction 230 246 - -
Gabi1679g00022 1232 ProSiteProfiles RWD domain profile. 46 155 IPR006575 GO:0005515
Gabi1679g00022 1232 FunFam eIF-2-alpha kinase GCN2 37 162 - -
Gabi1679g00022 1232 Gene3D Ubiquitin Conjugating Enzyme 34 162 IPR016135 -
Gabi1679g00022 1232 FunFam eIF-2-alpha kinase GCN2 407 535 - -
Gabi1679g00022 1232 FunFam Histidine--tRNA ligase, cytoplasmic 1123 1222 - -
Gabi1679g00022 1232 FunFam eIF-2-alpha kinase GCN2 539 731 - -
Gabi1679g00022 1232 SMART RWD2001b 46 155 IPR006575 GO:0005515
Gabi1679g00022 1232 SUPERFAMILY UBC-like 40 152 IPR016135 -
Gabi1679g00022 1232 Pfam Anticodon binding domain of tRNAs 1128 1224 IPR024435 -
Gabi1679g00022 1232 MobiDBLite consensus disorder prediction 218 246 - -
Gabi1679g00022 1232 SUPERFAMILY Class II aaRS ABD-related 1126 1222 - -
Gabi1679g00022 1232 Pfam Histidyl-tRNA synthetase 866 1109 IPR041715 -
Gabi1679g00022 1232 Gene3D Bira Bifunctional Protein; Domain 2 781 1115 IPR045864 -
Gabi1679g00022 1232 Pfam RWD domain 42 152 IPR006575 GO:0005515
Gabi1679g00022 1232 Coils Coil 969 989 - -
Gabi1679g00022 1232 Gene3D Transferase(Phosphotransferase) domain 1 538 722 - -
Gabi1679g00022 1232 SUPERFAMILY Class II aaRS and biotin synthetases 784 1111 IPR045864 -
Gabi1679g00022 1232 SUPERFAMILY Protein kinase-like (PK-like) 415 720 IPR011009 -
Gabi1679g00022 1232 FunFam eIF-2-alpha kinase GCN2 780 1116 - -
Gabi1679g00022 1232 PANTHER HISTIDYL-TRNA SYNTHETASE 782 1226 - -
Gabi1679g00022 1232 CDD STKc_EIF2AK4_GCN2_rpt2 412 717 - -
Gabi1679g00022 1232 Gene3D Phosphorylase Kinase; domain 1 408 535 - -
Gabi1679g00022 1232 ProSitePatterns Tyrosine protein kinases specific active-site signature. 574 586 IPR008266 GO:0004672|GO:0006468
Gabi1679g00022 1232 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1679g00022 Gabi-Chr1679 160517 193851 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1679g00022 425 717 MAP Kinase Kinase Kinase AT1G63700 25.083 2.59e-21 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Gabi1679g00022 Pkinase 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1679g00022 K16196 - gmx:100797996 2075.06