Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1679g00015 ATGAAAATTCAGTGTGATGTGTGTGAGAAAGCTCCAGCAACGGTGATTTGTTGCGCTGATGAGGCTGCTTTGTGTGCCAAATGTGATGTTGAAGTTCATGCTGCAAACAAGCTTGCAAGCAAGCACCAGAGGCTTCTCCTTCAATGTTTATCAAACAAGCTTCCAAGATGTGACATATGCCAAGATAAGGCAGCTTTCATATTTTGTGTTGAAGACAGAGCACTCTTCTGTAAGGACTGTGATGAATCGATTCATTTAGCCGGTAGTCTTTCTGCAAACCACCAGCGATTCCTTGCTACCGGTATCCGGGTTGCTTTGGGTTCTAATTGCACCAAAGGCAATGAAAAAAGTCACATGGAACCATCAAATCCAAATGCAAAAGAAGTTCCTGTGAAAATTCCTTCTCAGCAAGTGCCTAGCTTCACATCCTCTTGGGCTGTTGATGACTTACTGGAATTAACAGACTTTGAATCCCCAGACAAAAAGCAATCCCTGGAGTTTGGAGAGCTGGAATGGCTAGCAGATGTAGGTCTTTTCAGTGAACAGTTTCCTCAGGAAGCTTTAGCTGCAGCTGAAGTACCTCAGCTTCCAGTAACACACACTAGCAATGTTGCCTCATACAAAGCCTTTAAGTCCCATATGTCTCACAAAAAGCCTAGGATTGAAGTCCTAGGTGAAGATGATGATGATGATGAGCACTTCACTGTGCCTGATCTTGGTTAA 723 0.4357 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKAAFIFCVEDRALFCKDCDESIHLAGSLSANHQRFLATGIRVALGSNCTKGNEKSHMEPSNPNAKEVPVKIPSQQVPSFTSSWAVDDLLELTDFESPDKKQSLEFGELEWLADVGLFSEQFPQEALAAAEVPQLPVTHTSNVASYKAFKSHMSHKKPRIEVLGEDDDDDEHFTVPDLG 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1679g00015 240 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gabi1679g00015 240 CDD Bbox1_BBX-like 5 47 - -
Gabi1679g00015 240 Gene3D Classic Zinc Finger 1 98 - -
Gabi1679g00015 240 MobiDBLite consensus disorder prediction 225 240 - -
Gabi1679g00015 240 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 239 - -
Gabi1679g00015 240 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Gabi1679g00015 240 MobiDBLite consensus disorder prediction 219 240 - -
Gabi1679g00015 240 CDD Bbox1_BBX-like 57 98 - -
Gabi1679g00015 240 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Gabi1679g00015 240 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Gabi1679g00015 240 SMART bboxneu5 52 99 IPR000315 GO:0008270
Gabi1679g00015 240 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1679g00015 Gabi-Chr1679 111935 114929 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1679g00015 1 161 Orphan Transcription Factor Family AT1G06040 69.048 1.00e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Gabi1679g00015 zf-B_box 2.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1679g00015 - - gmx:100779183 442.58