Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1679g00012 ATGGATAAGAACAAATCCACTGGTCTTCCACCTCCATGTGGCCGTTACTCAACAACAGCAAATGTGAAATCAGAGCCATCACCAACATCATCATCATCAGACTCAGCTACCTTTAGCCATGATATTAACACAATGAGTGATAATCCTCCAAGAAACAGAGGGCATAGGCGTGCTCATTCTGAGATTCTGACCCTACCTGATGATATTAGCTTTGATAGTGATATTGGCATAGTTGGAGCTGATGACAATGATGAAGATTTACTTTCCATGTACCTTGATATGGATAAATTCAATTCTGAAGACAACAACATTGTTGATCAAAGTCATGGTTTTAGGCACAAACATAGCCAGTCCATGGATGGATCATCAACCACAATCAATCCTGACATGTTACTATCCGTTCCTGATTCTAAAAAAGCAATGTCTGCTGCTAAGCTTGCAGAGCTTGCCTTAATTGATCCCAAGCGTGCTAAAAGGGTATGGGCAAACAGACAGTCTGCTGCAAGATCAAAAGAAAGGAAGATGCGTTACATTTCCGAGCTTGAAATGAAGGTGCAGACATTGCAAACTGAAGCAACATCCTTGTCTGCACAATTAACTATCTTGCAGAGGGATACAAACGGACTGAATGCTGAGAACAGTGAGATGAAGTTGCGATTGCAAACCATGGAGCAACAAGTTCACTTGCAAGATGCATTGAACGATGCATTGAAAGAGGAAATTCAGCATTGGAAAGTACTGACTGGGCAAGCTATGCCGAATGGAGGACCTATGAACTTTTCTTCATTTGGAGGGGGGCAACAATTCTATTCCAACAATCAGGCGATGCACACTCTTTTAGCTTCACAACAGTTTCAACAACTTCAAATTCATTCCCAGAAGCCGCAACATCAACTTCAGCAGCAACAGCAGCATCAGCTTCAGCAACAGCAGCATCAGCTTCAGCAACAGCAACAACAGTTTCAGCAGCATCAACCGCAGCAGGAACAGTAG 993 0.427 MDKNKSTGLPPPCGRYSTTANVKSEPSPTSSSSDSATFSHDINTMSDNPPRNRGHRRAHSEILTLPDDISFDSDIGIVGADDNDEDLLSMYLDMDKFNSEDNNIVDQSHGFRHKHSQSMDGSSTTINPDMLLSVPDSKKAMSAAKLAELALIDPKRAKRVWANRQSAARSKERKMRYISELEMKVQTLQTEATSLSAQLTILQRDTNGLNAENSEMKLRLQTMEQQVHLQDALNDALKEEIQHWKVLTGQAMPNGGPMNFSSFGGGQQFYSNNQAMHTLLASQQFQQLQIHSQKPQHQLQQQQQHQLQQQQHQLQQQQQQFQQHQPQQEQ 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1679g00012 330 Coils Coil 178 240 - -
Gabi1679g00012 330 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 25 325 - -
Gabi1679g00012 330 MobiDBLite consensus disorder prediction 291 330 - -
Gabi1679g00012 330 FunFam probable transcription factor PosF21 154 207 - -
Gabi1679g00012 330 SMART brlzneu 151 215 IPR004827 GO:0003700|GO:0006355
Gabi1679g00012 330 MobiDBLite consensus disorder prediction 1 56 - -
Gabi1679g00012 330 Coils Coil 297 320 - -
Gabi1679g00012 330 CDD bZIP_plant_RF2 156 205 IPR044759 GO:0003700|GO:0006355
Gabi1679g00012 330 SUPERFAMILY Leucine zipper domain 155 206 IPR046347 GO:0003700|GO:0006355
Gabi1679g00012 330 Pfam bZIP transcription factor 155 209 IPR004827 GO:0003700|GO:0006355
Gabi1679g00012 330 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 153 216 IPR004827 GO:0003700|GO:0006355
Gabi1679g00012 330 MobiDBLite consensus disorder prediction 11 49 - -
Gabi1679g00012 330 Gene3D - 154 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1679g00012 Gabi-Chr1679 94311 97308 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1679g00012 30 282 bZIP Transcription Factor Family AT1G06070 66.553 2.04e-128 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi1679g00012 bZIP_1 2.1e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1679g00012 - - gmx:100786738 407.142