Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1679g00009 ATGCCGCTTCCGACGAAATCAATCAGGCCTGCTCAGGAAGGCGCCGCCGCCGTGAATTATTCGGAGGAGATGGTTACACCCTCCAACAACCTATGGGTTGGGAATCTGGCGCCGGACGTCACCGATTCCGATCTCATGGAACTCTTCGCCCAATACGGCGCACTCGATAGCGTGACCTCGTATTCCGCTCGCAGTTACGCGTTCGTGTTTTTCAAGCGCGTCGAAGATGCCAAGGCCGCCAAGAACGCTCTGCAAGGGTTCTCTCTTCGTGGAAATTCCTTGAAGATTGAGTTTGCTAGACCGGCAAAGCCATCTAAACAGCTTTGGGTGGGTGGTATTAGCCCAGCTGTTACAAAGGAAGAATTGGAAGCTGAATTTCGTAAATTTGGTAAAATTGAGGATTTTAGGTTCTTCAGAGACCGAAATACTGCTTGTGTTGAATTTTTCAATTTGGACGATGCTACTCAAGCAATGAAAATCATGAATGGGAAACGTATAGGTGGGGAGCATATCCGTGTCGATTTCCTACGGTCACATTCTACAAAAAAAGATCAATTGCTTGATTATGGGCAGTTTCAAGGGAAAAGCTTGGGTCCTGCTGATTCCTATTCTGGACAGAAAAGACCACTGTATTCACAACCTTCAATGGGGAGGAAGGGTGATGGTCAACCTAGTAATATTTTGTGGATTGGTTATCCTCCTGCTGTTCAGATTGACGAGCAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGCTTTCCTTCAAGGAATTTTTCGTTTGTTGAATTTAGAAGTGTTGATGAAGCTCGACGTGCGAAAGAGGGCCTTCAAGGACGCCTTTTTAATGATCCTCGAATTACAATTATGTATTCAAGCAGTGACCAGGTACCTGGCAAAGATTACCCCGGCTTTTATCCTGGAACTAACGGGCCAACACCTGATGTATTCCTGAATGAGCATCCATTTCGACCATTACAAATGGATGTATTTGGTCATAATCGTCCCATGGTTCCAAACAATTTTCCTGGACAGTTACCACCTAGTGGTATTATTGGACCCAACGTACCAATGCGGCCTTTTGGTCCTCAAGGTGGTCTCGAATCCCTTTCTGGTCCTGAGTTTAATGAGATTGGTACACACGACAAATTTCAGGATAGTAGCTCCAAGAGTAAGATGGGTCCAAACTGGAAGAGGCCATCTCCTCCTGCACCAGGGATGTTTTCTTCACCTGCAACGGGTATTAGGCTTCCTAAAAGATCAGCGTCTGGTGCATGGGATGTACTTGACATAAACCAGTTTGCAAGAGATTCTAAACGTTCAAGGGTAGATGGTACTTTGCCTGCAGATGATGTTCCATTTCCTTTAAGGAATATAGATGATCGTGGGTTAGCTATAGAACAAACATATGGAATCGATCCAGTCATTGATGGTGGTGGTTCTGGTCCATTTGTAAACATTCAAGGAAAGAATCACCTTGGTCCAATGAATACACAGATTACTGCTGGAGTACATGGTTCTGTCCAACCTGATACTGATCATATATGGCGTGGAATTATTGCAAAAGGGGGAACTCCTGTTTGTCGTGCTAGATGCGTCCCTATTGGGAAAGGGATTGGGTCAGAGCTTCCTGATGTTGTTGATTGCTCAGCTAGGACGGGGTTGGATATACTCACAAAACATTATGCTGATGCAATTGGTTTTGATATTGTTTTCTTTCTGCCTGATAGTGAAGATGATTTTGCCTCATACACTGAATTCCTACGCTACCTTAGTGCAAAAAATCGTGCTGGTGTAGCCAAATTTGGTGATAACACCACCTTATTCCTTGTACCCCCTTCTGATTTCCTGACAAAAGTTTTGAAAATCACTGGACCTGAACGTCTATATGGTGTGGTTCTTAAGTTTACGCCAGTGCCAAGTAGTGAACCCATGCAACAATCACCGCATTTGCCTATACCATCAACTCAGTATATGCAGCAGATTCCTCCTTCGCAGGCTGAATATGGTTTGATTCCTGTAAAGGAGGAACAGGCTTTACCAATGGATTATAACAGAATGTTGCGTGATGATTCTAAGCTTCCTGCTAAACCGGGCTATCCAGATACAGGTGGGGCCCCTTCAGTTCAGTGTGTGCCTCCTGATTATGCTCCTAATACCACTACTGTGTCCCAAGCGGGAGTTGCTTTAACACCTGAGCTTATTGCAACTTTAGCTTCTTTACTCCCTTCGACTACACAATCATCTGCCAGTGATGGTGCCATGTCAGCAGTAGGCTCCTCAACTATGAAGCCTCCATTTCCTCCTGTGGCACCTAATGATGGAAACCAATCTCATTTGTGGAAACAAAATCATCAAATTGCAGATCATTCCATTCATCCTCCTCAACAGTTGGGGGGCATGTATAGCTTTCACACTGCTCACTATCAGCCTTATCCACCAGCATCTGCTCCTGGCCACACTGCTCAAATGGTCTCTGGCAGTTCTCATATGCAAGACCATGCTGCCAACCTACAACAGCAAGGTGCTGTTTCATCCAGACACGTGTCTAATTTCGTGATACCTACTCAAAGTGGACAAGTAGCTGTATCTCCCCATCTCAGTGATCATTATCAGGTCGAAGTCTCCCCCAACACTCAGAAAGGCTTTGGAGTGGTTCAGGGATCAAATGCTTCTGTTTTATACAATTCTCAGGCATTCCAGCAACCTAACAACAATTCTCAGGCTTTCCAGCAACCTAACAACAATTCTCAGGCTTTCCAGCAACCTAATAATAATTCTATTGGCTTATCTAATCAAGTTAACAATGTTAATCCTTCTCAGCAACAAACTGTCATGCCATATGCAGTGGACCAAGTAAACTCAGACCCTCCCAATCATCAGCAACTTCCTGTCTTTGGAGTTGGTCAAGGCACATCAGAAGTGGAGGCTGATAAGAACCAGAGATACCAGTCAACATTACAGTTTGCTGCCAATCTTCTCCAACAAATACAGCAGCAGCAGCAAACCCAAGGAGGACATGGGCCAGGAATTCAACAATGA 3057 0.4462 MPLPTKSIRPAQEGAAAVNYSEEMVTPSNNLWVGNLAPDVTDSDLMELFAQYGALDSVTSYSARSYAFVFFKRVEDAKAAKNALQGFSLRGNSLKIEFARPAKPSKQLWVGGISPAVTKEELEAEFRKFGKIEDFRFFRDRNTACVEFFNLDDATQAMKIMNGKRIGGEHIRVDFLRSHSTKKDQLLDYGQFQGKSLGPADSYSGQKRPLYSQPSMGRKGDGQPSNILWIGYPPAVQIDEQMLHNAMILFGEIERIKSFPSRNFSFVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSSDQVPGKDYPGFYPGTNGPTPDVFLNEHPFRPLQMDVFGHNRPMVPNNFPGQLPPSGIIGPNVPMRPFGPQGGLESLSGPEFNEIGTHDKFQDSSSKSKMGPNWKRPSPPAPGMFSSPATGIRLPKRSASGAWDVLDINQFARDSKRSRVDGTLPADDVPFPLRNIDDRGLAIEQTYGIDPVIDGGGSGPFVNIQGKNHLGPMNTQITAGVHGSVQPDTDHIWRGIIAKGGTPVCRARCVPIGKGIGSELPDVVDCSARTGLDILTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLSAKNRAGVAKFGDNTTLFLVPPSDFLTKVLKITGPERLYGVVLKFTPVPSSEPMQQSPHLPIPSTQYMQQIPPSQAEYGLIPVKEEQALPMDYNRMLRDDSKLPAKPGYPDTGGAPSVQCVPPDYAPNTTTVSQAGVALTPELIATLASLLPSTTQSSASDGAMSAVGSSTMKPPFPPVAPNDGNQSHLWKQNHQIADHSIHPPQQLGGMYSFHTAHYQPYPPASAPGHTAQMVSGSSHMQDHAANLQQQGAVSSRHVSNFVIPTQSGQVAVSPHLSDHYQVEVSPNTQKGFGVVQGSNASVLYNSQAFQQPNNNSQAFQQPNNNSQAFQQPNNNSIGLSNQVNNVNPSQQQTVMPYAVDQVNSDPPNHQQLPVFGVGQGTSEVEADKNQRYQSTLQFAANLLQQIQQQQQTQGGHGPGIQQ 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1679g00009 1018 FunFam flowering time control protein FPA 219 312 - -
Gabi1679g00009 1018 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 101 IPR000504 GO:0003723
Gabi1679g00009 1018 SUPERFAMILY RNA-binding domain, RBD 21 104 IPR035979 GO:0003676
Gabi1679g00009 1018 MobiDBLite consensus disorder prediction 197 220 - -
Gabi1679g00009 1018 Gene3D - 215 306 IPR012677 -
Gabi1679g00009 1018 CDD RRM_SF 108 174 - -
Gabi1679g00009 1018 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 178 IPR000504 GO:0003723
Gabi1679g00009 1018 MobiDBLite consensus disorder prediction 909 930 - -
Gabi1679g00009 1018 Gene3D - 103 193 IPR012677 -
Gabi1679g00009 1018 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 299 IPR000504 GO:0003723
Gabi1679g00009 1018 Gene3D - 16 102 IPR012677 -
Gabi1679g00009 1018 Pfam SPOC domain 515 632 IPR012921 -
Gabi1679g00009 1018 MobiDBLite consensus disorder prediction 385 421 - -
Gabi1679g00009 1018 FunFam Flowering time control protein FPA 21 103 - -
Gabi1679g00009 1018 SUPERFAMILY RNA-binding domain, RBD 203 306 IPR035979 GO:0003676
Gabi1679g00009 1018 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 171 IPR000504 GO:0003723
Gabi1679g00009 1018 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 292 IPR000504 GO:0003723
Gabi1679g00009 1018 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 95 IPR000504 GO:0003723
Gabi1679g00009 1018 FunFam Flowering time control protein FPA isoform A 104 218 - -
Gabi1679g00009 1018 CDD RRM_SF 31 97 - -
Gabi1679g00009 1018 SMART rrm1_1 227 295 IPR000504 GO:0003723
Gabi1679g00009 1018 SMART rrm1_1 107 174 IPR000504 GO:0003723
Gabi1679g00009 1018 SMART rrm1_1 30 97 IPR000504 GO:0003723
Gabi1679g00009 1018 Coils Coil 985 1005 - -
Gabi1679g00009 1018 SUPERFAMILY RNA-binding domain, RBD 103 189 IPR035979 GO:0003676
Gabi1679g00009 1018 PANTHER RNA RECOGNITION MOTIF-CONTAINING 27 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1679g00009 Gabi-Chr1679 74048 84842 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1679g00009 28 361 Eukaryotic Initiation Factors Gene Family AT4G34110 21.579 8.72e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1679g00009 - - gmx:100777570 1651.34