Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1679g00003 ATGGTACTTCTAGATCTCTCTCTGTCTTCATCGATTCTTCATCCGAAGCAAATTCATGAGATTAAGGATTTCCTACTCACAGCGCGGAGGAAGGATGCACGCTCTGTGAAAATCAAGAGGAGCAGGGATGTAGTGAAGTTCAAGGTGCGATGCTCAAAGTATCTATACACTCTTTGTGTGTTTGATCCTGAGAAGGCTGATAAGTTGAAGCAATCACTTCCTCCTGGTTTGAGTGTGCAAGATCTGTAA 249 0.4337 MVLLDLSLSSSILHPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDPEKADKLKQSLPPGLSVQDL 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1679g00003 82 FunFam 60S ribosomal protein L38 14 82 - -
Gabi1679g00003 82 Pfam Ribosomal L38e protein family 15 81 IPR002675 GO:0003735|GO:0005840|GO:0006412
Gabi1679g00003 82 PANTHER 60S RIBOSOMAL PROTEIN L38 15 81 IPR002675 GO:0003735|GO:0005840|GO:0006412
Gabi1679g00003 82 Gene3D - 14 82 IPR038464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1679g00003 Gabi-Chr1679 7267 8137 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1679g00003 15 82 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 94.118 8.21e-43 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1679g00003 K02923 - pop:7474400 138.658