Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1670g00019 ATGGAATCGCCCGGTAACGACCATGTCCTGAGTGGTGGAGAACCCAACGACGTCGTTAGACCCTTTTCCCACAGACAAGAACATGAACAAGAACAAGAACAACACCACAATTCCCAACCTCTTACCGGCGATGGTGCCAGTCCTGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACCATTGCTCAATTTATCAAGCACTTTGGTAACTATGGTGAGATTACGGATTCTGTCATCATGAAGGACAGGAAAACTGGTCAGCCTCGTGGATTCGGGTTTATAACGTATGCTGATCCCTCTGTGGTTGATAAAGTCATTGAGGATACTCATATTATCAATGGCAAACAAGTTGAAATTAAGCGGACCATACCAAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATTTTTGTAGGTGGGATTCCTTCAAATGTGACTGAAGATGAATTTAGAGACTTCTTTACACGCTATGGAGAAGTCAAAGATAACCAAATAATGCGGGACCACTCCACCAATCGATCTCGTGGCTTTGGGTTTGTCACCTTTGACTCTGAGGAAGCTGTTGATGATCTTCTATCTATGGGGAATAAGATTGAGTTTGCTGGAACTCAGGTGGAAATCAAGAAAGCTGAACCAAAGAAGCCAAACCCACCACCTCCATCATCCAAGCGCTATAATGACTCAAGGTCTTCATACAGTGGTGGTGGATACGGAGATGCTTATGATGGGTTTGGTGGCAGCTTTGGTGCTGGTGGTTACAGGTCTGCTGGTGTCTATGGTAGGGGTGGTGCTTATGGTGGCTATGGAAGTGAATTTGGTGGGTATGGAGGATATGCTGGTGCAATGGGACCCTATAGGGGAGATCCTTCCCTTGGGTATGCAGGTCGTTATGGTGGAAGCTTTAGCAGAGGCTATGATCTAGGTGGGTATGGTGGACCTAGTGAGAGTTATGGAGCATATAGTGGTGGTGCTGGTGGTGGGGGTTCTTCTGGTGGTGCTGGTGCCTATCAAAGTGGCTATGATGCCAGTCTTGGGGGTGGATATGGAGGGGCTAGTGGAGGCTCCTTCTATGGCAGCAGAGGAGGATATGGTGCTGCTGGTCGATATCATCCTTATGGAAGATAG 1134 0.4691 MESPGNDHVLSGGEPNDVVRPFSHRQEHEQEQEQHHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGNYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFVTFDSEEAVDDLLSMGNKIEFAGTQVEIKKAEPKKPNPPPPSSKRYNDSRSSYSGGGYGDAYDGFGGSFGAGGYRSAGVYGRGGAYGGYGSEFGGYGGYAGAMGPYRGDPSLGYAGRYGGSFSRGYDLGGYGGPSESYGAYSGGAGGGGSSGGAGAYQSGYDASLGGGYGGASGGSFYGSRGGYGAAGRYHPYGR 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1670g00019 377 SUPERFAMILY RNA-binding domain, RBD 39 127 IPR035979 GO:0003676
Gabi1670g00019 377 Gene3D - 19 131 IPR012677 -
Gabi1670g00019 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 125 IPR000504 GO:0003723
Gabi1670g00019 377 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 27 377 - -
Gabi1670g00019 377 MobiDBLite consensus disorder prediction 20 35 - -
Gabi1670g00019 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 118 IPR000504 GO:0003723
Gabi1670g00019 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 208 IPR000504 GO:0003723
Gabi1670g00019 377 MobiDBLite consensus disorder prediction 208 234 - -
Gabi1670g00019 377 SMART rrm1_1 138 211 IPR000504 GO:0003723
Gabi1670g00019 377 SMART rrm1_1 50 121 IPR000504 GO:0003723
Gabi1670g00019 377 FunFam Heterogeneous nuclear ribonucleoprotein 1 48 129 - -
Gabi1670g00019 377 FunFam Heterogeneous nuclear ribonucleoprotein 1 130 251 - -
Gabi1670g00019 377 Gene3D - 137 220 IPR012677 -
Gabi1670g00019 377 SUPERFAMILY RNA-binding domain, RBD 135 241 IPR035979 GO:0003676
Gabi1670g00019 377 MobiDBLite consensus disorder prediction 1 50 - -
Gabi1670g00019 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 215 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1670g00019 Gabi-Chr1670 190304 193808 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1670g00019 49 205 Eukaryotic Initiation Factors Gene Family AT1G71770 27.746 1.22e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1670g00019 K12741 - gmx:100793209 432.565