LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1670g00018	ATGGAATCACCTGTCAATGGAGTTGAGTCCTTACCTGAGGTTCAGAATTCAGTTTCTGGGGTACATCACGATCCTCCTTCAACATGTGGGACTCCCCGTCCTTCCCGGCCTCCCTTGAGAGCATCTAGAAATCATGGAGCTTCTTCCACATCCTATTTGGCTGGTCAACATAATTATCCAACAAAGATCATTCACCATCAAAACAGCTATGTAATTAATCAAAAGCATTCCTATCAGGAAGGCAACAATGTGGAGCATGGCGGATTGCCAACAAAATTGTGCAGCAAGCAACCTTTTGATGATTCAAAGAATTGTGATTCAAGTGGCGTATTAGAATCTGACAATTGCGTCTTAGGTCCATCAAAACGAGCTGTTGTTAATCATGCAAAGAGTTACTATCAGTCAGAGGTTACTTTTTGTCCAAGTCCTCAGAATAGTTTCTATTCAGCCACTGTCTATTCAGAAGCCAAAGAAAGTTTCACTAATACTGAAGTCAGTGAGTGTGCTAGTGTTGATAAGTCATGTGAAAGTGGAGAAGTTACAAATTCCTGTGATTTTAATGAGAGTAGGAAGACCAGCATCTGTAGAGGGAGCACCGGAAGTGATATTAGTGATGAGAGCAGCACCAGTAGTTTGAGCAGTGCTTTGTATAAACCCCATAAGGCAAATGATATAAGATGGGAAGCAATTCAAGCGATCCGAGCTCGTGATGGAATGTTGGAAATGAGGCATTTCAGGTTGTTGAAGAAATTAGGATGTGGAGACATAGGAAGCGTTTATCTAGCAGAACTGAGTGGCACAAGGACTTCTTTTGCCATGAAAATCATGAACAAAACAGAGCTGGCAGGCCGCAAGAAGCTTCTGAGGGCTCAGACGGAGAGAGAGATATTGCAGTGTTTAGATCATCCTTTTCTACCCACATTATATACACACTTTGAGACAGAGACATTCTCCTGCTTGGTAATGGAGTTCTGCCCTGGTGGGGACCTGCATGCACTCAGGCAAAGACAACCTGGCAAGTATTTTTCTGAGCATGCTGTCAGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTGGAGTATTTGCACATGCTTGGGATCATCTACAGAGACCTTAAACCTGAGAATGTGTTGGTGAGAGAAGATGGTCACATAATGTTGTCAGATTTTGATCTCTCTCTAAGGTGCACTGTCAATCCAACTCTAGTAAAGTCATCAAACCCTAACTTGGAGACAAAAAGCTCAGGATACTGCATTCAGCCTGCTTGCATTGAACCAACATGTGTACTCCAGCCAGACTGCATCCAACCCTCATGTTTTACACCGCGTTTTCTATCTGGAAAATCCAAGAGAGAAAAGAAGTTTAAACCAAAGAATGATCTGCATCATCAGGTGACCCCTCTTCCCGAGCTGATTGCCGAGCCCACAAATGCAAGATCAATGTCCTTCGTAGGCACACACGAGTACTTGGCGCCTGAAATCATCAAAGGTGAAGGGCATGGCAGTGCTGTAGACTGGTGGACATTTGGAATATTCTTGTACGAGCTTTTGTTTGGTAGAACACCATTCAAGGGTTCGGCGAACCGCGCAACTTTGTTTAATGTTGTTGGGCAGCCCTTAAGGTTCCCAGAATCTCCTACTGTCAGTTTTGCTGCCAGGGACTTGATAAGGGGTTTACTTGTGAAAGAACCTCAGCATCGTCTTGCCTATAGACGTGGAGCTACAGAGATTAAACAGCATCCATTCTTTCACAATGTTAACTGGGCACTCATTCGTTGTACAAATCCTCCAGAGGTGCCAAGACAGGCTGTGAGACCACCCCAAAATGAAAAGGAGCTTGGTGTGAATCCTACTGGTAATTATTTAGATATTGATTTCTTTTGA	1881	0.4359	MESPVNGVESLPEVQNSVSGVHHDPPSTCGTPRPSRPPLRASRNHGASSTSYLAGQHNYPTKIIHHQNSYVINQKHSYQEGNNVEHGGLPTKLCSKQPFDDSKNCDSSGVLESDNCVLGPSKRAVVNHAKSYYQSEVTFCPSPQNSFYSATVYSEAKESFTNTEVSECASVDKSCESGEVTNSCDFNESRKTSICRGSTGSDISDESSTSSLSSALYKPHKANDIRWEAIQAIRARDGMLEMRHFRLLKKLGCGDIGSVYLAELSGTRTSFAMKIMNKTELAGRKKLLRAQTEREILQCLDHPFLPTLYTHFETETFSCLVMEFCPGGDLHALRQRQPGKYFSEHAVRFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCTVNPTLVKSSNPNLETKSSGYCIQPACIEPTCVLQPDCIQPSCFTPRFLSGKSKREKKFKPKNDLHHQVTPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVVGQPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFHNVNWALIRCTNPPEVPRQAVRPPQNEKELGVNPTGNYLDIDFF	626

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1670g00018	626	Gene3D	Transferase(Phosphotransferase) domain 1	476	600	-	-
	Gabi1670g00018	626	MobiDBLite	consensus disorder prediction	1	53	-	-
	Gabi1670g00018	626	FunFam	Serine/threonine-protein kinase D6PK-like	243	328	-	-
	Gabi1670g00018	626	SUPERFAMILY	Protein kinase-like (PK-like)	222	604	IPR011009	-
	Gabi1670g00018	626	FunFam	serine/threonine-protein kinase D6PK-like	477	600	-	-
	Gabi1670g00018	626	PANTHER	FLIPPASE KINASE 1-RELATED	115	605	-	-
	Gabi1670g00018	626	ProSiteProfiles	Protein kinase domain profile.	245	582	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1670g00018	626	Gene3D	Transferase(Phosphotransferase) domain 1	329	398	-	-
	Gabi1670g00018	626	FunFam	serine/threonine-protein kinase D6PK-like	329	396	-	-
	Gabi1670g00018	626	Pfam	Protein kinase domain	246	396	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1670g00018	626	Pfam	Protein kinase domain	479	582	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1670g00018	626	Gene3D	Phosphorylase Kinase; domain 1	243	328	-	-
	Gabi1670g00018	626	CDD	STKc_phototropin_like	243	604	-	-
	Gabi1670g00018	626	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	366	378	IPR008271	GO:0004672\|GO:0006468
	Gabi1670g00018	626	SMART	serkin_6	245	582	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1670g00018	626	MobiDBLite	consensus disorder prediction	9	24	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1670g00018	Gabi-Chr1670	171623	175702	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1670g00018	153	626	AGC Kinase Gene Family	AT5G47750	70.122	0.0	696

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Gabi1670g00018		Pkinase	4.4e-37	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1670g00018	K08286		-	gmx:100810909	1096.26