Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1670g00016 ATGGAGAAAGGGGTCGTGGAAAGCCTTTGGAATGGTAATATAGAAACTCAAATTCAAGCAGCCATGCAACTTTGTAGATTATGCAGGAAGCAGAGGCACAATTTGGCAGAAACTGGAGTTATGGTTCCTCTGATTTCTATGCTTTATTCTGAAAACTATGAAGCCATAGAAGCTGCTCTGTGTGCTCTTCTCAGCCTTTCCTTTGGCAGTGAACGAAACAAGATTAGGATCATCCAGTCTGAAGCTTTGCCAATTTTCCTGAGTCTCCTCCATTCTCAAAGCCAAACAGTGGCACAATTGACAATAGCAGCCATGTTAATCCTCTCTTCTTGCAAGGCAAATAAGGTAGCAATTGCTTCATCTGGGGCTGTACAAGTATTGGCTGAATTTGTTAATTGGGGCAGCACTCAGTCCCAGCTTGATGCTATAGCTACTCTCCACAACCTCTCAACCTGCCAAGAGATTATACCATTGATTGTCTCTTCCGGTGTTATACTCTCCTTGCTTGAACTGATTCACATATCAGTAAAATCATCTCCATTGGTTGAGAAAGCAATTGGGTTGCTAGAAAATATTGTCTTTTCATCAGAGAGTGCACTTTGTGAGGCTGCAAGTGCTGGGGGAGCAATTGGGATACTGGTTGAGACTATTGAAGATGGATCTTTACTAGGAAAAGAGCATGCAGTGGGTATACTTCTCCTTATATGCAAGAGCTGTAGAGAAAAGTACAGAGGATTGATTTTGAGAGAGGGAGTGATGCCAGGATTGCTTCAGTTAAGCATGGATGGAACGCAGAGAGCCAAATCCATGGCTCGAGAATTGTTGTTGCTTCTGAGGGACTGCTCCAATTATAGCTCAAGACGTAGGCAAATTAATCGTGAGCTTATAGAACAGATCATGGAAGAAATTGATGCAGAAGGAGAGGAATTGACAGATACTACTTTCAGGTTGGTAGAGGAGATGATTGCGAAGCTCAATTCATGA 984 0.4258 MEKGVVESLWNGNIETQIQAAMQLCRLCRKQRHNLAETGVMVPLISMLYSENYEAIEAALCALLSLSFGSERNKIRIIQSEALPIFLSLLHSQSQTVAQLTIAAMLILSSCKANKVAIASSGAVQVLAEFVNWGSTQSQLDAIATLHNLSTCQEIIPLIVSSGVILSLLELIHISVKSSPLVEKAIGLLENIVFSSESALCEAASAGGAIGILVETIEDGSLLGKEHAVGILLLICKSCREKYRGLILREGVMPGLLQLSMDGTQRAKSMARELLLLLRDCSNYSSRRRQINRELIEQIMEEIDAEGEELTDTTFRLVEEMIAKLNS 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1670g00016 327 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 163 207 IPR000225 GO:0005515
Gabi1670g00016 327 SMART arm_5 111 151 IPR000225 GO:0005515
Gabi1670g00016 327 SMART arm_5 28 68 IPR000225 GO:0005515
Gabi1670g00016 327 SMART arm_5 152 194 IPR000225 GO:0005515
Gabi1670g00016 327 SMART arm_5 70 110 IPR000225 GO:0005515
Gabi1670g00016 327 FunFam U-box domain-containing protein 4 3 197 - -
Gabi1670g00016 327 SUPERFAMILY ARM repeat 6 309 IPR016024 -
Gabi1670g00016 327 FunFam U-box domain-containing protein 4 200 316 - -
Gabi1670g00016 327 PANTHER U BOX DOMAIN-CONTAINING 5 281 - -
Gabi1670g00016 327 Gene3D - 2 324 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1670g00016 Gabi-Chr1670 155651 157522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1670g00016 3 280 U-box Gene Family AT2G23140 32.384 4.97e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1670g00016 - - gmx:100778534 478.404