Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1663g00001 ATGGAAATTAAATTCCAGCAGCAACAAAAGCAGCATTTGAGGCCAAGCATATCATCAAAAGGAGGAAAATTCAAAGGGAGAAAGAGATCAAACAATAGTAACAACACAAACAAGTTTGTTGGGGTAAGACAAAGACCTTCAGGGAGATGGGTTGCTGAGATCAAAGACACAACACAAAAGATAAGAATGTGGCTTGGCACATTTGAAACTGCAGAGGAAGCTGCAAGAGCTTATGATGAAGCTGCATGTCTTCTAAGGGGATCCAACACTCGAACCAACTTCACCACTCATGTATCTTTGGATTCTCCTCTTGCTTTTCGGATTCGAAATCTTCTTAACAACAGAAAAGGTACCAAACAAGAAGAAGATGTTGTTGCATCTGCTACAAGAACTACCACACACAATGTTAGCAGCACTAGTAGTACTAGTTCAAGCAATAATGACAACAATGACAACAAATCACTTTCTAGTGGGACAACAACTCCTCAAAATACTCAACTATTTGATGATGATGCTTATAGACCAGATTTGAGTAATTTCAGGAATGAGTCTGAGTCAGGTTCTAAGTCCAATCTTTCATGGGGTTGTGAACCTGTTTTAGATCGTTTTCCTTTTGCTCAAGCATTGGATATACCAAACCCTGATGGATTGCCTTATGCAGCTGAGTTGGAGCTTTCAGAATTTGAAAGGATGAAAGTTGAAAGACAAATATCAGCTTCACTTTATGCAATTAATGGTGTGCATGAGTACATGGAAACTGTTCAGGACTCTAATGAACTTCTCTGGGACCTTCCACCCTTGTGCTCATTTTTCTCTTAA 819 0.3932 MEIKFQQQQKQHLRPSISSKGGKFKGRKRSNNSNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFTTHVSLDSPLAFRIRNLLNNRKGTKQEEDVVASATRTTTHNVSSTSSTSSSNNDNNDNKSLSSGTTTPQNTQLFDDDAYRPDLSNFRNESESGSKSNLSWGCEPVLDRFPFAQALDIPNPDGLPYAAELELSEFERMKVERQISASLYAINGVHEYMETVQDSNELLWDLPPLCSFFS 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1663g00001 272 MobiDBLite consensus disorder prediction 117 192 - -
Gabi1663g00001 272 Pfam AP2 domain 38 87 IPR001471 GO:0003700|GO:0006355
Gabi1663g00001 272 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Gabi1663g00001 272 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Gabi1663g00001 272 Gene3D AP2/ERF domain 37 97 IPR036955 GO:0003700|GO:0006355
Gabi1663g00001 272 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
Gabi1663g00001 272 FunFam ethylene-responsive transcription factor RAP2-11 37 96 - -
Gabi1663g00001 272 CDD AP2 38 94 IPR001471 GO:0003700|GO:0006355
Gabi1663g00001 272 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
Gabi1663g00001 272 SUPERFAMILY DNA-binding domain 38 96 IPR016177 GO:0003677
Gabi1663g00001 272 MobiDBLite consensus disorder prediction 1 16 - -
Gabi1663g00001 272 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 23 240 - -
Gabi1663g00001 272 MobiDBLite consensus disorder prediction 124 168 - -
Gabi1663g00001 272 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1663g00001 Gabi-Chr1663 16057 16875 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1663g00001 25 271 AP2-EREBP Transcription Factor Family AT5G19790 44.231 1.54e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi1663g00001 AP2 6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1663g00001 K09286 - gmx:100796898 333.183