Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1662g00024 ATGTTCAAATTCTTGAAAGAGGTGGTTGGTGGATCTGGAACCGGCCACAAGGATCTACCCTACACCATCGCCGAACCTTTCCCTTCCGCTTGGGGCTCTTGGACTCATTCCCGAGGCACCTCCAAGGACGATGGTTCTCCAGTCTCAATCTTCTCTCTTTCAGGCTCTAATGCTCAGGACGGACATTTAGCTGCTGCGCGCAACGGCGTCAAGCGTCTTCGAACTGTCAGGCATCCGAATATTTTATCGTTTCTTCACAGCGCTGAGATTGAAACTTATGATGCCGGTTCTCCCAAGGTCACAATCTATATTGTGACGGAGCCTGTAATGCCGCTATCGGAAAAGATCAAGGAGTTAGGTCTTGAAGGTACACAAAGGGATGAATATTATGCTTGGGGTCTGCTTCAAGTAGCTAAAGCTGTGAGCTTCTTAAATAATGATTGTAAACTTGTCCACGCTAATGTTTGCTTGGCTAGTGTTGTTGTCACGCCAACTTTGGACTGGAAGCTCCATGCTCTTGATGTTCTATCAGAGTTTGATGGGAGTAACGAAACTTCTTCTGGCCAAATGCTGCAATATGCATGGCTTGTTGGATCACAATACAAACCAATGGAGTTGGTAAAATCAGACTGGGATGTAATTAAGAAGTCTCCTCCCTGGGCCATTGATTCTTGGGGCATGGGTTGTCTAATCTATGAAGTATTTTCTGGTTTGCGGTTGGGAAAAACAGAAGAGTTACGCAACACTGTCTCCATTCCCAAGTCTCTGCTTCCAGATTACCAGCGGCTATTGAGTTCAATGCCCTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGTGAATATTTTCAAAATAAGTTGGTAGACACAATACATTTCATGGAAATTCTTAGTTTGAAAGACAGTGTTGAGAAAGACACCTTCTTTCGCAAGCTTCCAAATTTAGCTGAGCAACTTCCTCGCCAGATAGTGTTGAAGAAGTTACTTCCTTTATTAGCTTCTGCCCTTGAATTTGGTTCAGCAACTGCCCCAGCTTTGACTGCATTGCTGAAAATAGGTTCCTGGCTTTCGGCTGAGGAGTTTAGCGTCAAGGTGCTTCCAACAATTATAAAACTATTTGCCTCCAATGACCGAGCTATTCGAGTTGCCCTTCTTCAACATATTGATCAATATGGAGAATCATTATCTGCGCATGCTGTTGATGAACAAGTATACCCTCATATTGCTACTGGATTCTCCGATACATCTGCTTTTCTGAGGGAACTGACTCTAAAGTCTATGCTAGTTCTGGCTCCAAAGTTGTCTCAAAGGACCATTTCAGGGTCGTTATTGAAGCATCTGTCAAAGTTGCAGGTTGATGAAGAACCAGCAATTCGAACAAATACTACCATCTTATTAGGCAATATTGGAAGCTACCTAAACGAGGGAACAAGAAGAAGAGTTTTGATTAATGCATTTACAGTCCGTGCATTACGTGATACTTTTCCACCTGCTAGAGGAGCAGGCATTATGGCTTTATGTGCCACCAGCTCCTACTATGACATCACTGAAGTTGCAACCCGGATTCTTCCTAATGTTGTTGTGCTCACAATTGATCCTGACAGTGATGTTAGAACGAAGGCATTTCAAGCTGTTGATCTGTTTTTGCAGATAGCAAAGCAATATTATGAAAAGACAAATGCAGCAGATGCTACTGGTGGTGAGGGCATGGGAATCTCATCAATTCCAGGAAATGCAGGTTTACTTGGATGGGCTATGAGCTCTTTGACCTTGAAGGGTAAACCTTCTGATCATGCTCCAGTTGCTTCTATGAGTTCAACTGCAATTGGTTCTGTGAGTTCGACTGCAATTACTCGAACATCTTCTAACGGCAGCTCAGAGACGCCATCAACAGCACCAGCACGTGTAAGCTCTACAACAGATTTGGCTGAACATCCTGTCCCTACGTCCCCTACATCAATGGATGGCTGGGGAGAACTTGAGAATGGAATCGATGATGAACATGAAAGTGAGAGGGATGGATGGGATGATCTGGAACCACTTGAAGAGACAAAGCCAACTCCAGCTCTTGCAAACATCCAAGCAGCTCAAAGGCGGCCAGTCTCTCAACCTATGTCACAGACAAAACAAGCCTCAAGTTTGCTATCCAAGAGTACACCGAAATTGAGCAATGATGAAGATGATGGTTTGTGGGGTTCTATAGCAGCTCCTGCTCCAAAAACATCAAGGCCTATAAATTTGAAATCAACTAGAACTGATGATGATGATCCCTGGGCTGCCATTGCTGCTCCCGCACCCACTACTAAGGTCAAGCCCTTATCAGTTGGCAGAGGTCGGGGAGCCAAACCAGCTGCTCCAAAATTAGGAGCTCAGCGGATAAACCGGACATCATCATCAGGCATGTAA 2409 0.4433 MFKFLKEVVGGSGTGHKDLPYTIAEPFPSAWGSWTHSRGTSKDDGSPVSIFSLSGSNAQDGHLAAARNGVKRLRTVRHPNILSFLHSAEIETYDAGSPKVTIYIVTEPVMPLSEKIKELGLEGTQRDEYYAWGLLQVAKAVSFLNNDCKLVHANVCLASVVVTPTLDWKLHALDVLSEFDGSNETSSGQMLQYAWLVGSQYKPMELVKSDWDVIKKSPPWAIDSWGMGCLIYEVFSGLRLGKTEELRNTVSIPKSLLPDYQRLLSSMPSRRLNTSKLIENSEYFQNKLVDTIHFMEILSLKDSVEKDTFFRKLPNLAEQLPRQIVLKKLLPLLASALEFGSATAPALTALLKIGSWLSAEEFSVKVLPTIIKLFASNDRAIRVALLQHIDQYGESLSAHAVDEQVYPHIATGFSDTSAFLRELTLKSMLVLAPKLSQRTISGSLLKHLSKLQVDEEPAIRTNTTILLGNIGSYLNEGTRRRVLINAFTVRALRDTFPPARGAGIMALCATSSYYDITEVATRILPNVVVLTIDPDSDVRTKAFQAVDLFLQIAKQYYEKTNAADATGGEGMGISSIPGNAGLLGWAMSSLTLKGKPSDHAPVASMSSTAIGSVSSTAITRTSSNGSSETPSTAPARVSSTTDLAEHPVPTSPTSMDGWGELENGIDDEHESERDGWDDLEPLEETKPTPALANIQAAQRRPVSQPMSQTKQASSLLSKSTPKLSNDEDDGLWGSIAAPAPKTSRPINLKSTRTDDDDPWAAIAAPAPTTKVKPLSVGRGRGAKPAAPKLGAQRINRTSSSGM 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1662g00024 802 Gene3D - 282 560 IPR011989 -
Gabi1662g00024 802 SUPERFAMILY Protein kinase-like (PK-like) 38 286 IPR011009 -
Gabi1662g00024 802 ProSiteProfiles HEAT repeat profile. 366 404 IPR021133 -
Gabi1662g00024 802 Gene3D Transferase(Phosphotransferase) domain 1 109 280 - -
Gabi1662g00024 802 Gene3D Phosphorylase Kinase; domain 1 12 107 - -
Gabi1662g00024 802 MobiDBLite consensus disorder prediction 615 648 - -
Gabi1662g00024 802 ProSiteProfiles Protein kinase domain profile. 3 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1662g00024 802 SMART serkin_6 4 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1662g00024 802 SUPERFAMILY ARM repeat 293 552 IPR016024 -
Gabi1662g00024 802 MobiDBLite consensus disorder prediction 615 802 - -
Gabi1662g00024 802 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 11 775 - -
Gabi1662g00024 802 MobiDBLite consensus disorder prediction 697 721 - -
Gabi1662g00024 802 MobiDBLite consensus disorder prediction 662 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1662g00024 Gabi-Chr1662 168577 181838 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1662g00024 70 291 MAP Kinase Kinase Kinase AT5G66850 23.932 4.65e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL1 Gabi1662g00024 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1662g00024 K08876 - gmx:100789813 1404.04