Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1662g00023 ATGTTCAAATTCTTGAAAGAGGTGGTTGGTGGATCTGGAACCGGCCACAAGGATCTACCCTACACCATCGCCGAACCTTTCCCTTCCGCTTGGGGCTCTTGGACTCATTCCCGAGGCACCTCCAAGGACGATGGTTCTCCAGTCTCAATCTTCTCTCTTTCAGGCTCTAATGCTCAGGACGGACATTTAGCTGCTGCGCGCAACGGCGTCAAGCGTCTTCGAACTGTCAGGCATCCGAATATTTTATCGTTTCTTCACAGCGCTGAGATTGAAACTTATGATGCCGGTTCTCCCAAGGTCACAATCTATATTGTGACGGAGCCTGTAATGCCGCTATCGGAAAAGATCAAGGAGTTAGGTCTTGAAGGTACACAAAGGGATGAATATTATGCTTGGGGTCTGCTTCAAGTAGCTAAAGCTGTGAGCTTCTTAAATAATGATTGTAAACTTGTCCACGCTAATGTTTGCTTGGCTAGTGTTGTTGTCACGCCAACTTTGGACTGGAAGCTCCATGCTCTTGATGTTCTATCAGAGTTTGATGGGAGTAACGAAACTTCTTCTGGCCAAATGCTGCAATATGCATGGCTTGTTGGATCACAATACAAACCAATGGAGTTGGTAAAATCAGACTGGGATGTAATTAAGAAGTCTCCTCCCTGGGCCATTGATTCTTGGGGCATGGGTTGTCTAATCTATGAAGTATTTTCTGGTTTGCGGTTGGGAAAAACAGAAGAGTTACGCAACACTGTCTCCATTCCCAAGTCTCTGCTTCCAGATTACCAGCGGCTATTGAGTTCAATGCCCTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGTGAATATTTTCAAAATAAGTTGGTAGACACAATACATTTCATGGAAATTCTTAGTTTGAAAGACAGTGTTGAGAAAGACACCTTCTTTCGCAAGCTTCCAAATTTAGCTGAGCAACTTCCTCGCCAGATAGTGTTGAAGAAGTTACTTCCTTTATTAGCTTCTGCCCTTGAATTTGGTTCAGCAACTGCCCCAGCTTTGACTGCATTGCTGAAAATAGGTTCCTGGCTTTCGGCTGAGGAGTTTAGCGTCAAGGTGCTTCCAACAATTATAAAACTATTTGCCTCCAATGACCGAGCTATTCGAGTTGCCCTTCTTCAACATATTGATCAATATGGAGAATCATTATCTGCGCATGCTGTTGATGAACAAGTATACCCTCATATTGCTACTGGATTCTCCGATACATCTGCTTTTCTGAGGGAACTGACTCTAAAGTCTATGCTAGTTCTGGCTCCAAAGTTGTCTCAAAGGACCATTTCAGGGTCGTTATTGAAGCATCTGTCAAAGTTGCAGGTTGATGAAGAACCAGCAATTCGAACAAATACTACCATCTTATTAGGCAATATTGGAAGCTACCTAAACGAGGGAACAAGAAGAAGAGTTTTGATTAATGCATTTACAGTCCGTGCATTACGTGATACTTTTCCACCTGCTAGAGGAGCAGGCATTATGGCTTTATGTGCCACCAGCTCCTACTATGACATCACTGAAGTTGCAACCCGGATTCTTCCTAATGTTGTTGTGCTCACAATTGATCCTGACAGTGATGTTAGAACGAAGGCATTTCAAGCTGTTGATCTGTTTTTGCAGATAGCAAAGCAATATTATGAAAAGACAAATGCAGCAGATGCTACTGGTGGTGAGGGCATGGGAATCTCATCAATTCCAGGAAATGCAGGTTTACTTGGATGGGCTATGAGCTCTTTGACCTTGAAGGGTAAACCTTCTGATCATGCTCCAGTTGCTTCTATGAGTTCAACTGCAATTGGTTCTGTGAGTTCGACTGCAATTACTCGAACATCTTCTAACGGCAGCTCAGGCATAGAGACGCCATCAACAGCACCAGCACGTGTAAGCTCTACAACAGATTTGGCTGAACATCCTGTCCCTACGTCCCCTACATCAATGGATGGCTGGGGAGAACTTGAGAATGGAATCGATGATGAACATGAAAGTGAGAGGGATGGATGGGATGATCTGGAACCACTTGAAGAGACAAAGCCAACTCCAGCTCTTGCAAACATCCAAGCAGCTCAAAGGCGGCCAGTCTCTCAACCTATGTCACAGACAAAACAAGCCTCAAGTTTGCTATCCAAGAGTACACCGAAATTGAGCAATGATGAAGATGATGGTTTGTGGGGTTCTATAGCAGCTCCTGCTCCAAAAACATCAAGGCCTATAAATTTGAAATCAACTAGAACTGATGATGATGATCCCTGGGCTGCCATTGCTGCTCCCGCACCCACTACTAAGGTCAAGCCCTTATCAGTTGGCAGAGGTCGGGGAGCCAAACCAGCTGCTCCAAAATTAGGAGCTCAGCGGATAAACCGGACATCATCATCAGGCATGTAA 2415 0.4435 MFKFLKEVVGGSGTGHKDLPYTIAEPFPSAWGSWTHSRGTSKDDGSPVSIFSLSGSNAQDGHLAAARNGVKRLRTVRHPNILSFLHSAEIETYDAGSPKVTIYIVTEPVMPLSEKIKELGLEGTQRDEYYAWGLLQVAKAVSFLNNDCKLVHANVCLASVVVTPTLDWKLHALDVLSEFDGSNETSSGQMLQYAWLVGSQYKPMELVKSDWDVIKKSPPWAIDSWGMGCLIYEVFSGLRLGKTEELRNTVSIPKSLLPDYQRLLSSMPSRRLNTSKLIENSEYFQNKLVDTIHFMEILSLKDSVEKDTFFRKLPNLAEQLPRQIVLKKLLPLLASALEFGSATAPALTALLKIGSWLSAEEFSVKVLPTIIKLFASNDRAIRVALLQHIDQYGESLSAHAVDEQVYPHIATGFSDTSAFLRELTLKSMLVLAPKLSQRTISGSLLKHLSKLQVDEEPAIRTNTTILLGNIGSYLNEGTRRRVLINAFTVRALRDTFPPARGAGIMALCATSSYYDITEVATRILPNVVVLTIDPDSDVRTKAFQAVDLFLQIAKQYYEKTNAADATGGEGMGISSIPGNAGLLGWAMSSLTLKGKPSDHAPVASMSSTAIGSVSSTAITRTSSNGSSGIETPSTAPARVSSTTDLAEHPVPTSPTSMDGWGELENGIDDEHESERDGWDDLEPLEETKPTPALANIQAAQRRPVSQPMSQTKQASSLLSKSTPKLSNDEDDGLWGSIAAPAPKTSRPINLKSTRTDDDDPWAAIAAPAPTTKVKPLSVGRGRGAKPAAPKLGAQRINRTSSSGM 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1662g00023 804 SUPERFAMILY Protein kinase-like (PK-like) 38 286 IPR011009 -
Gabi1662g00023 804 ProSiteProfiles HEAT repeat profile. 366 404 IPR021133 -
Gabi1662g00023 804 Gene3D Transferase(Phosphotransferase) domain 1 109 280 - -
Gabi1662g00023 804 Gene3D Phosphorylase Kinase; domain 1 12 107 - -
Gabi1662g00023 804 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 11 777 - -
Gabi1662g00023 804 Gene3D - 282 560 IPR011989 -
Gabi1662g00023 804 MobiDBLite consensus disorder prediction 616 650 - -
Gabi1662g00023 804 SUPERFAMILY ARM repeat 293 552 IPR016024 -
Gabi1662g00023 804 MobiDBLite consensus disorder prediction 699 723 - -
Gabi1662g00023 804 ProSiteProfiles Protein kinase domain profile. 3 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1662g00023 804 SMART serkin_6 4 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1662g00023 804 MobiDBLite consensus disorder prediction 664 686 - -
Gabi1662g00023 804 MobiDBLite consensus disorder prediction 616 804 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1662g00023 Gabi-Chr1662 168577 181838 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1662g00023 70 291 MAP Kinase Kinase Kinase AT5G66850 23.729 4.70e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL1 Gabi1662g00023 None None None