Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1662g00022 ATGATTTCCCTATCAACTAACCCCTTCTTTCTCCTCACTACACAAAACGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACTACTACTAGATTTCACACTGCAAACAAGGTAAATTCATTCTACAACAAGAAGCACGGTAAGGATCATAGAAAGTTTGTCTGTGCTTGCATCGCTCCTCCGCGAAACTTCAAAAGCCAAGACTCTTCCGCCATTCAATTCAATGGTTCATCCAAATCAGAACAATTAAGCACGGTGCGCGATCATGAGGTTGATTCTAATGTTCTTATTGAGTGTAGAGAAGTCTACAAGTCTTTTGGGGAAAAGAAAATCTTAAATGGTGTCAGCTTCAAGATCAGAGATGGTGAAGCTGTTGGAATTATTGGTCCCTCTGGGACAGGCAAATCTACAGTTTTGAAGATTATTGCAGGACTTCTTGCTCCAGATAAGGGGGAAGTTTATATTCGAGGTAGAAAGAGAGTTGGTTTAATAAGCGATGATGAGATATCTGGTCTTCGGATTGGTTTAGTGTTCCAAAGTGCAGCACTTTTTGATTCTTTGACTGTTCGTGAAAATGTTGGTTTTCTCTTATATGAACACTCAAGCATGTCTGAGGAACAGATATCAGATCTTGTCAAGGAAAGCTTGGCTGCAGTTGGATTAAAGGGAGTTGAGGATCGGATGCCTTCTGAGTTATCAGGCGGGATGAAAAAGCGAGTTGCTTTAGCACGATCTATTATTTTTGACAACACACAGGATTCAATAGAGCCAGAGGTGCTCTTGTATGATGAACCAACTGCTGGTCTTGATCCCATTGCATCTACTGTTGTTGAGGATCTGATTCGCTCTGTGCATGTAAAAGGACGAGATGCACTTGGAAAACCTGGGAACATTGCATCTTATGTGGTTGTTACTCATCAACATAGTACCATTAAAAGAGCCATTGATAGGTTGTTGTTTTTACACAACGGAAAGATTGTTTGGGAAGGAATGACTCATGAATTCACAACTTCAACAAATCCAATTGTTCAGCAGTTTGCATCCGGGAGCCTGGATGGTCCTATCAAATATTAG 1071 0.4062 MISLSTNPFFLLTTQNASSSSSSSSSTTTRFHTANKVNSFYNKKHGKDHRKFVCACIAPPRNFKSQDSSAIQFNGSSKSEQLSTVRDHEVDSNVLIECREVYKSFGEKKILNGVSFKIRDGEAVGIIGPSGTGKSTVLKIIAGLLAPDKGEVYIRGRKRVGLISDDEISGLRIGLVFQSAALFDSLTVRENVGFLLYEHSSMSEEQISDLVKESLAAVGLKGVEDRMPSELSGGMKKRVALARSIIFDNTQDSIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHVKGRDALGKPGNIASYVVVTHQHSTIKRAIDRLLFLHNGKIVWEGMTHEFTTSTNPIVQQFASGSLDGPIKY 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1662g00022 356 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 337 IPR027417 -
Gabi1662g00022 356 Pfam ABC transporter 111 266 IPR003439 GO:0005524
Gabi1662g00022 356 Gene3D - 82 348 IPR027417 -
Gabi1662g00022 356 ProSitePatterns ABC transporters family signature. 231 245 IPR017871 GO:0005524|GO:0016887
Gabi1662g00022 356 SMART AAA_5 120 324 IPR003593 GO:0016887
Gabi1662g00022 356 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 17 356 - -
Gabi1662g00022 356 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 96 347 IPR003439 GO:0005524
Gabi1662g00022 356 CDD ABC_Org_Solvent_Resistant 96 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1662g00022 Gabi-Chr1662 160890 165148 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1662g00022 102 340 Calmodulin-binding Proteins AT2G36910 28.740 4.66e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1662g00022 - - gmx:100789283 573.933