Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1662g00013 ATGTCCTCTATTTTCATAAATCAATCCCTTTCTTGGAGAGCTCTTGATCTATCTCAACATCTGAATTACTGTATCCCAGTGGCTATCACATGGAGAGTTAAGGAATTGACACACACCAACCTGGTCATGTATTATCTGAAGACTGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCACTCCGCCAAAATGAGCCTGAATGCGCTTATTATTTAAGAACTGGACAATGCAAATTTGGTAACACTTGCAAATTCCACCATCCTCAACCAAGTAACATGGTGCTTTCAATGCGGGGTTCGCCTGTTTATCCTACCATACATTCTCCAACTACACCCGGTCAGCAGTCATATGCGGCAGGAATTACAAATTGGTCTAGTTCTTCCTATATTCCTAGTCCACGCTGGCAAGGCCCTTCAAGTTATGCACCTTTAATTCTACCTCAGGGAGTGGTTTCAGTCCCTGGATGGAGTACATACGATGGTCAAATGGGATCAGACAGTTCACAGCAAGTAGCAGGAAGTGGTCAAACCTATGGAACTTCTCGCCAAGGTGAACCAACAAATGCAGGATCCCAAGGGGCATATTCTCAATTCCGTTCTGACTCTGTTCCTGTAGGATTCTATGCATTGCAGAGGGAGAACATATTTCCTGAGAGACCTGATCAACCTGAATGCCAATTCTACATGAAGACTGGAGATTGTAAGTTTGGTGCAGTCTGTCGTTTCCATCATCCACGTGAGAGGCTGATTCCTGCTCCTGACTGTGTTTTGAGTCCCATAGGCCTTCCTTTACGTCATGGAGAGCCTTTGTGTGTCTTTTATTCACGTTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGATCACCCAATGGGAATCTTCACCTATAATATATCTGTATCACCTTCAGCTGATGACCCAGGACGGCGTCTGTTGGGTTCTTCATCGGGAACTGCTGCATTAAATTTATCATCAGAAGGACTTGTTGAGACATCCTCAGCGAAGCCAAGGAGGCTTTCATTATCAGAGACTAGACAGATTCCTTCTGGTGATGATAACATTGATGATGAGGGATAA 1140 0.4404 MSSIFINQSLSWRALDLSQHLNYCIPVAITWRVKELTHTNLVMYYLKTGTCKFGATCRFHHPRDKAGIAGRVALNILGYPLRQNEPECAYYLRTGQCKFGNTCKFHHPQPSNMVLSMRGSPVYPTIHSPTTPGQQSYAAGITNWSSSSYIPSPRWQGPSSYAPLILPQGVVSVPGWSTYDGQMGSDSSQQVAGSGQTYGTSRQGEPTNAGSQGAYSQFRSDSVPVGFYALQRENIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERLIPAPDCVLSPIGLPLRHGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNISVSPSADDPGRRLLGSSSGTAALNLSSEGLVETSSAKPRRLSLSETRQIPSGDDNIDDEG 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1662g00013 379 ProSiteProfiles Zinc finger C3H1-type profile. 36 64 IPR000571 GO:0046872
Gabi1662g00013 379 SUPERFAMILY CCCH zinc finger 287 312 IPR036855 GO:0046872
Gabi1662g00013 379 ProSiteProfiles Zinc finger C3H1-type profile. 239 267 IPR000571 GO:0046872
Gabi1662g00013 379 PANTHER PROTEIN PHOSPHATASE RELATED 44 333 - -
Gabi1662g00013 379 FunFam CCCH type zinc finger protein 237 325 - -
Gabi1662g00013 379 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 288 312 IPR000571 GO:0046872
Gabi1662g00013 379 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 85 109 IPR000571 GO:0046872
Gabi1662g00013 379 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 241 266 IPR000571 GO:0046872
Gabi1662g00013 379 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 43 63 IPR000571 GO:0046872
Gabi1662g00013 379 Gene3D - 237 319 - -
Gabi1662g00013 379 Gene3D - 34 119 - -
Gabi1662g00013 379 SUPERFAMILY CCCH zinc finger 242 269 IPR036855 GO:0046872
Gabi1662g00013 379 SMART c3hfinal6 36 63 IPR000571 GO:0046872
Gabi1662g00013 379 SMART c3hfinal6 82 109 IPR000571 GO:0046872
Gabi1662g00013 379 SMART c3hfinal6 239 266 IPR000571 GO:0046872
Gabi1662g00013 379 SMART c3hfinal6 285 312 IPR000571 GO:0046872
Gabi1662g00013 379 ProSiteProfiles Zinc finger C3H1-type profile. 285 313 IPR000571 GO:0046872
Gabi1662g00013 379 MobiDBLite consensus disorder prediction 344 369 - -
Gabi1662g00013 379 MobiDBLite consensus disorder prediction 182 215 - -
Gabi1662g00013 379 MobiDBLite consensus disorder prediction 344 379 - -
Gabi1662g00013 379 ProSiteProfiles Zinc finger C3H1-type profile. 82 110 IPR000571 GO:0046872
Gabi1662g00013 379 SUPERFAMILY CCCH zinc finger 85 110 IPR036855 GO:0046872
Gabi1662g00013 379 SUPERFAMILY CCCH zinc finger 39 65 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1662g00013 Gabi-Chr1662 102302 109337 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1662g00013 44 377 C2H2 Transcription Factor Family AT3G02830 58.651 1.44e-126 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi1662g00013 zf-CCCH 5.8e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1662g00013 - - gmx:100786261 664.455