Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1662g00012 ATGGAATTCGATTCCATCCTTCCTCAAGATGCAATGTGGCAAATGAACTTGAGGTCAAGTGAAACAATGGAATCAGGACCTTATCCCGAGCATCCTGGAGAACCAGATTGTTCATATTACATCAGAACTGGTCTTTGTAGATTTGGAGCAACATGTCGATTTAATCATCCCCCTAACAGGAAGCTGGCTATTGCCACTGCACGAATGAAAGGCGAGTTCCCAGAAAGGATAGGGCAGCCAGAATGTCAGTATTATCTGAAGACTGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCACTCCGCCAAAATGAGCCTGAATGCGCTTATTATTTAAGAACTGGACAATGCAAATTTGGTAACACTTGCAAATTCCACCATCCTCAACCAAGTAACATGGTGCTTTCAATGCGGGGTTCGCCTGTTTATCCTACCATACATTCTCCAACTACACCCGGTCAGCAGTCATATGCGGCAGGAATTACAAATTGGTCTAGTTCTTCCTATATTCCTAGTCCACGCTGGCAAGGCCCTTCAAGTTATGCACCTTTAATTCTACCTCAGGGAGTGGTTTCAGTCCCTGGATGGAGTACATACGATGGTCAAATGGGATCAGACAGTTCACAGCAAGTAGCAGGAAGTGGTCAAACCTATGGAACTTCTCGCCAAGGTGAACCAACAAATGCAGGATCCCAAGGGGCATATTCTCAATTCCGTTCTGACTCTGTTCCTGTAGGATTCTATGCATTGCAGAGGGAGAACATATTTCCTGAGAGACCTGATCAACCTGAATGCCAATTCTACATGAAGACTGGAGATTGTAAGTTTGGTGCAGTCTGTCGTTTCCATCATCCACGTGAGAGGCTGATTCCTGCTCCTGACTGTGTTTTGAGTCCCATAGGCCTTCCTTTACGTCATGGAGAGCCTTTGTGTGTCTTTTATTCACGTTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGATCACCCAATGGGAATCTTCACCTATAATATATCTGTATCACCTTCAGCTGATGACCCAGGACGGCGTCTGTTGGGTTCTTCATCGGGAACTGCTGCATTAAATTTATCATCAGAAGGACTTGTTGAGACATCCTCAGCGAAGCCAAGGAGGCTTTCATTATCAGAGACTAGACAGATTCCTTCTGGTGATGATAACATTGATGATGAGGGATAA 1260 0.446 MEFDSILPQDAMWQMNLRSSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMKGEFPERIGQPECQYYLKTGTCKFGATCRFHHPRDKAGIAGRVALNILGYPLRQNEPECAYYLRTGQCKFGNTCKFHHPQPSNMVLSMRGSPVYPTIHSPTTPGQQSYAAGITNWSSSSYIPSPRWQGPSSYAPLILPQGVVSVPGWSTYDGQMGSDSSQQVAGSGQTYGTSRQGEPTNAGSQGAYSQFRSDSVPVGFYALQRENIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERLIPAPDCVLSPIGLPLRHGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNISVSPSADDPGRRLLGSSSGTAALNLSSEGLVETSSAKPRRLSLSETRQIPSGDDNIDDEG 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1662g00012 419 Gene3D - 108 156 - -
Gabi1662g00012 419 ProSiteProfiles Zinc finger C3H1-type profile. 325 353 IPR000571 GO:0046872
Gabi1662g00012 419 ProSiteProfiles Zinc finger C3H1-type profile. 76 104 IPR000571 GO:0046872
Gabi1662g00012 419 ProSiteProfiles Zinc finger C3H1-type profile. 32 59 IPR000571 GO:0046872
Gabi1662g00012 419 ProSiteProfiles Zinc finger C3H1-type profile. 122 150 IPR000571 GO:0046872
Gabi1662g00012 419 FunFam CCCH type zinc finger protein 277 365 - -
Gabi1662g00012 419 SUPERFAMILY CCCH zinc finger 327 352 IPR036855 GO:0046872
Gabi1662g00012 419 PANTHER PROTEIN PHOSPHATASE RELATED 16 373 - -
Gabi1662g00012 419 SUPERFAMILY CCCH zinc finger 80 105 IPR036855 GO:0046872
Gabi1662g00012 419 Gene3D - 30 107 - -
Gabi1662g00012 419 Gene3D - 278 355 - -
Gabi1662g00012 419 SUPERFAMILY CCCH zinc finger 36 59 IPR036855 GO:0046872
Gabi1662g00012 419 SUPERFAMILY CCCH zinc finger 125 150 IPR036855 GO:0046872
Gabi1662g00012 419 SUPERFAMILY CCCH zinc finger 282 309 IPR036855 GO:0046872
Gabi1662g00012 419 SMART c3hfinal6 279 306 IPR000571 GO:0046872
Gabi1662g00012 419 SMART c3hfinal6 325 352 IPR000571 GO:0046872
Gabi1662g00012 419 SMART c3hfinal6 31 58 IPR000571 GO:0046872
Gabi1662g00012 419 SMART c3hfinal6 76 103 IPR000571 GO:0046872
Gabi1662g00012 419 SMART c3hfinal6 122 149 IPR000571 GO:0046872
Gabi1662g00012 419 MobiDBLite consensus disorder prediction 384 409 - -
Gabi1662g00012 419 ProSiteProfiles Zinc finger C3H1-type profile. 279 307 IPR000571 GO:0046872
Gabi1662g00012 419 MobiDBLite consensus disorder prediction 384 419 - -
Gabi1662g00012 419 FunFam Zinc finger nuclease 2 30 107 - -
Gabi1662g00012 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 33 58 IPR000571 GO:0046872
Gabi1662g00012 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 79 103 IPR000571 GO:0046872
Gabi1662g00012 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 125 149 IPR000571 GO:0046872
Gabi1662g00012 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 281 306 IPR000571 GO:0046872
Gabi1662g00012 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 328 352 IPR000571 GO:0046872
Gabi1662g00012 419 MobiDBLite consensus disorder prediction 222 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1662g00012 Gabi-Chr1662 100783 109334 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1662g00012 12 417 C2H2 Transcription Factor Family AT3G02830 62.712 8.36e-177 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi1662g00012 zf-CCCH 6.6e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1662g00012 - - gmx:100786261 827.78