Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1662g00004 ATGGTAGATGATGTGATTGTTAATGCTAATAATGTTGAGATGCCAATGTCTCATTCTGAGGAAGCTAGCGACGAAAACGCGCTGCCTAAAAATGCTCTCCATGGTGAGGATGTTGAACAGCAACCTGTTTTAGATGGAGAGCAGAAAGAGGCAACCCATGCATCAGGAGCAGTAAGGACCTCTGAGGATGGTTATAATTGGAGGAAATATGGACAGAAACAGGTGAAAGGTAGTGAGTATCCCAGGAGCTACTATAAATGTACTCAGCCTAATTGTCAGGTCAAGAAAAAGGTGGAACGATCCCATGATGGCCAAATAACAGAAATTATTTACAAGGGTGCTCATAACCATTCAAAACCACATCTTAGTCGTCGAGCATCAGCACTTTCTACTGATGAGATGTCAGACATGGTTGAAGCCAGTGAAACCTTTGCTAGAGTTGAAGGTGGGTCAGTTTGGAGAAATATTCAGTCAGGATTTAAAGATGCAAAACACAGTTTGGATTGGAAAGCTGATGGTCAGGAAAGGACACCCCCAACTTCTGTTGTGACTGATCTTTCAGACCCTACATCAACTAAGAAAGCTAAATCTCTATGTATGTTTGAATCGGAGGACACTCCAGAGCTTTCTTCTACACTTGCCAGTCATGATGGTGATGAAGATGGAGCCACTGAAGCACTCATATCACCTGAAGATGATGGTGAAGATGATGAATCAGAGTCGAAAAGAAGGAAGAAAGAGAGCTACCCAGTTGAATCAAATTTGCCTTCCAGGGCTGTCCGTGAGCCAAGAGTGGTAGTCCAAATTGAGAGTGAAGTGGACATACTTGATGATGGTTATCGCTGGCGTAAGTATGGACAGAAGGTTGTCAAAGGAAATCCAAATCCTAGGAGCTACTACAAATGCACAAGTGCTGGATGTTCTGTAAGGAAGCACGTCGAAAGGGCTTCACACAATCTAAAATTTGTGGTCACTACTTATGAGGGAAAACATAATCATGAAGTGCCTACTGCTAGAACCAACAACCAGATAAGCTCAAGTGATGGTGGCTTACCTCCCACTGGTGCTAATGGGCAAGTGGCTCTTACATTACAAGGGAGTGCCAGTATCCCAAAGCATGGAACTCATCAAACTCTTGCACCCCATTTTGATAGAAAACATGAATTCAGCAACGAGTTTCTCAGGCCTAGTTTGGTTGGAAGTTTCAGTAATGATATGAAGTTTGGTCCTTCCTCCATATGCCAAATGAAGTATCCTTCCTTGAATAACACCATGCCTTATGGTTCCTATGGACTGAATCCTGACCGTTGTGCTGCCCCTCAAGCTGGATCTATTGCTATGTTCCCTGATTTTCCAATGCCACTACCATTGAATCTTCCCTCATCTGGAAATTTTTCTCTTGCTGGAATTAACTTTAACTGTGTGAAACCAATGGGTCCTGTCCAGTCTTTCCTTTCAGGGCAGCAGGTGAAGGATATTGATGCAGGGTTCCTGAGGCCTAAACAGGAGCAGAAGGATGACACTATGTATGGCTCATGCATACCCTCTCTTGATCATGCAAATGCTTCACTCACTTCATCCTCAGCAACACCATCCATTTATCAACGTGTCATGCAAAATTTCCCTTCATAA 1632 0.4332 MVDDVIVNANNVEMPMSHSEEASDENALPKNALHGEDVEQQPVLDGEQKEATHASGAVRTSEDGYNWRKYGQKQVKGSEYPRSYYKCTQPNCQVKKKVERSHDGQITEIIYKGAHNHSKPHLSRRASALSTDEMSDMVEASETFARVEGGSVWRNIQSGFKDAKHSLDWKADGQERTPPTSVVTDLSDPTSTKKAKSLCMFESEDTPELSSTLASHDGDEDGATEALISPEDDGEDDESESKRRKKESYPVESNLPSRAVREPRVVVQIESEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCSVRKHVERASHNLKFVVTTYEGKHNHEVPTARTNNQISSSDGGLPPTGANGQVALTLQGSASIPKHGTHQTLAPHFDRKHEFSNEFLRPSLVGSFSNDMKFGPSSICQMKYPSLNNTMPYGSYGLNPDRCAAPQAGSIAMFPDFPMPLPLNLPSSGNFSLAGINFNCVKPMGPVQSFLSGQQVKDIDAGFLRPKQEQKDDTMYGSCIPSLDHANASLTSSSATPSIYQRVMQNFPS 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1662g00004 543 SUPERFAMILY WRKY DNA-binding domain 58 120 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi1662g00004 543 FunFam WRKY transcription factor 33 263 329 - -
Gabi1662g00004 543 ProSiteProfiles WRKY domain profile. 271 336 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi1662g00004 543 Gene3D WRKY domain 47 121 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi1662g00004 543 SUPERFAMILY WRKY DNA-binding domain 269 336 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi1662g00004 543 Gene3D WRKY domain 263 329 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi1662g00004 543 MobiDBLite consensus disorder prediction 18 32 - -
Gabi1662g00004 543 MobiDBLite consensus disorder prediction 237 251 - -
Gabi1662g00004 543 ProSiteProfiles WRKY domain profile. 56 120 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi1662g00004 543 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 24 363 IPR044810 GO:0003700
Gabi1662g00004 543 SMART WRKY_cls 276 335 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi1662g00004 543 SMART WRKY_cls 61 119 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi1662g00004 543 Pfam WRKY DNA -binding domain 277 334 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi1662g00004 543 Pfam WRKY DNA -binding domain 62 117 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi1662g00004 543 MobiDBLite consensus disorder prediction 167 190 - -
Gabi1662g00004 543 FunFam WRKY transcription factor 48 121 - -
Gabi1662g00004 543 MobiDBLite consensus disorder prediction 1 60 - -
Gabi1662g00004 543 MobiDBLite consensus disorder prediction 203 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1662g00004 Gabi-Chr1662 37453 39301 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1662g00004 61 339 WRKY Transcription Factor Family AT5G56270 52.145 7.01e-87 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi1662g00004 WRKY 2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1662g00004 K18835 - gmx:100800211 900.197