Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1657g00041 ATGTTTTCAAAATATGATTTTCTGAAGGATGTCAATCCTGTCAAAGAAGACTGGAGGATTAAGGTGAAGTTGGTTCGTGCTTGGAAAGTTCCTAATTTTCAACGTAGAGATTTTGACGACAATGTTGAAATGGTTTTATTGGATGAACATGGTGGTAGGATCCATGCCACTGTCAAGGATTCTTTGCCGGTGCGAAAGAAAATCCATGAAGGAGATGAATTTGATTTTGTTGATTATGACATCGTTGAGAAAGAAACGTCTGACTCTCCTTATTTAGTCAACGTCATTGGTTTAAGCTCAGGAATTAGAGAAGCTTGTGATCGTGTGGTTTCTGGTAGGAAGACAAAAATGGTAGTGTTGGAGCTTGACAACCTGAGGGGTCACAAGCTGGAGAGCACTTTGTGGGAGCATTATATGGATGAGGTGCAGTCTTTTTTGGCAAATAGCGACACTCCTCATAACGTCCTGATAGTCCAACTGGGAAGGAAAAAATGTTTTAGGGGTAAGGTTGGGATAACAAATACAAAATATACAACAAGGATTGTCACGGATTCGAAGGTGCCAGAGATCGTTAAGTTCAAAAAATGTTGTCTACTCAGTCCTCCTATTCTTAGGGAGACTGAAAAGAAGTCTATCAGTGATGTTAAGCTTTATGGTGAAGTTACAACGTGCATCACGTACGGGACTATAAAAGCTATTGAGAGCAAATACAACTGGTGGTACAAGTCTTGCAAAAAATGTCCATTTTCCGTTTGTGAGGATTTTGAAAAGTGGTACTGTAAGAACTGCCAAAAACATTGGGAAGATTATTATCCGAGATTTAGTGTTCAGGTCAGAGTTGTGGATAACACAGATTCCGCGGCATTTCTTCTGTTTGATCGCGACTGTGTGTCTTTATTGGGAATGAGTGCTGGTGAATTGCGCGAGCTGCATTTCAAGAGGTGTGCGGATTTGGATCAATTTCCAGAAGAGTTAAATGTTCTGAATGAGAAGTCAATGTTGTTCAAGATAAATGTGAAGCAAAAGGATTTGAACTCATACAGTGAGCCCAAATATCAAGATGAAGCAAATTTTGATAATGCTTGCGAAAATGAAGTTGTATCGTCGGAACCAAAAAAGGCTGCGGATGTTGAGAGTCAGACCTGTGATAGTGCTGACGTTGGTGATATCTCTCTGACGATGTTGTCACCTGTGATCAATTCTCAGGATTCCATTGCTGGAGAATTTAAATTTTCAGCTGTTCGGACGGCGAAGAGAATAAAGCTTGAAAAAGAATTTGATGCAGAAGCAGATGAGAATACCCCGTAG 1308 0.4021 MFSKYDFLKDVNPVKEDWRIKVKLVRAWKVPNFQRRDFDDNVEMVLLDEHGGRIHATVKDSLPVRKKIHEGDEFDFVDYDIVEKETSDSPYLVNVIGLSSGIREACDRVVSGRKTKMVVLELDNLRGHKLESTLWEHYMDEVQSFLANSDTPHNVLIVQLGRKKCFRGKVGITNTKYTTRIVTDSKVPEIVKFKKCCLLSPPILRETEKKSISDVKLYGEVTTCITYGTIKAIESKYNWWYKSCKKCPFSVCEDFEKWYCKNCQKHWEDYYPRFSVQVRVVDNTDSAAFLLFDRDCVSLLGMSAGELRELHFKRCADLDQFPEELNVLNEKSMLFKINVKQKDLNSYSEPKYQDEANFDNACENEVVSSEPKKAADVESQTCDSADVGDISLTMLSPVINSQDSIAGEFKFSAVRTAKRIKLEKEFDAEADENTP 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1657g00041 435 PANTHER OS03G0429900 PROTEIN 8 374 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gabi1657g00041 435 SUPERFAMILY Nucleic acid-binding proteins 208 353 IPR012340 -
Gabi1657g00041 435 Gene3D - 204 364 IPR012340 -
Gabi1657g00041 435 Gene3D - 73 198 IPR012340 -
Gabi1657g00041 435 SUPERFAMILY Nucleic acid-binding proteins 6 73 IPR012340 -
Gabi1657g00041 435 CDD RPA1_DBD_C 224 353 IPR047192 -
Gabi1657g00041 435 Pfam Replication factor-A C terminal domain 226 352 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1657g00041 Gabi-Chr1657 247158 249872 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1657g00041 226 346 Core DNA Replication Machinery Family AT5G08020 28.689 1.53e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1657g00041 - - soe:130461853 190.274