Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1657g00040 ATGATATTGTTGAACCAAATGAGAAAAGAAAAAAAGCAGTTCAAGGAAGAGCATCTCTTTAGATCAAAATTACCAGACATACCCATCTCCAACAACCTTCCCCTTCACACCTACTGCTTCCATAAACTCCCCGAACTTTCCGACCGTCCATGTCTCATTGTCGGCGACAAAACCTACACCTACGCCGAAACTCACCTCGCATCTCGAAAGTTCGCCGCCGGTCTGTCCAATCTCGGCATCAACAAAGGTGATGTCATCATGATTCTCCTCCCAAACTCCCCGGAGTTCGTCTTCTCATTCATGGCGGCATCCATGATCGGCGCCGTCGCCACCACCGCCAACCCATTCTACACCGCCGCCGAAATCTCGAAGCAACTCACCGCTTCCAAAGCCAAACTCATCGTCACTCGTTCCACGTACGTCCACAAGCTCAACGTAGAGGATTTCAAGGTGATCACCGTCGACAACCCGCCGGAGAACTGCCTGCATTTCTCGGCTGTTTCCGAAGCCGACGAGAGCGAACTACCGGAGGTGGAGATCAACCCGGAGGACGACACGGTGGCGCTGCCGTTCTCCTCCGGGACAACGGGGTTACCGAAGGGCGTGGTTCTGACACACAAGAGTCTTATAACGAGCGTGGCTCAACAAGTTGACGGAGAGAACCCGAACCTGTACATGAAACCAGAGGACGTTGTGCTTTGCGTGCTTCCTTTGTTTCACATATTCTCGATGCACAGTGTGATGATGTGTGCGTTGAGAGCGGGGAGTGGGATTTTGCTGATGGAGAAGTTTGAGATAAGGGAATTGATGGAGATGATAGAGCGGCACAGGGTGTCGGTGGCGATGGTGGTGCCGCCGCTGGTGGTGGCAATGATAAAGAACCCGAGGGTGGAGGAGTATGACCTGAGCTCCGTACGGTTGGTGATGTCAGGGGCAGCGCCGCTTGGGAAGGAGCTTGAGGAGGCTCTTCGGAGCAGATTGCCTCATGCAGTTCTTGGGCAGGGATACGGGATGACAGAGGCTGGGCCTGTGTTGTCGATGTGTTTGGGGTTTGCAAAACAGCCATTCCCATCGAAGTCAGGGTCATGTGGCACTGTAGTCAGAAATGCAGAGATAAAGGTCCTTGACCCTGAAACTGGTTCTTCTCTTTCCCATAATCAGCCTGGTGAGATTTGCATCCGAGGCCCACAGATCATGAAAGGATACCTGAATGACGAGAAGGCCACAGCAGCAACTATAGATGGCGAGGGTTGGCTTCATACGGGAGATATTGGCTACGTAGATGATGATGATGAGATTTTCATTGTTGACAGGCTCAAGGAACTCATCAAATTTAAAGGCTTCCAGGTGCCGCCGGCAGAACTTGAAGGCTTTCTTGTGAGCCACCCTTCTATTGTGGATGCAGCTGTTGTCCCGCAAATGGATGATGCTGCGGGTGAAGTTCCAGTTGCTTTCGTGGTTAGCTTTGATCTTACTGAAGAAGCTATAAAGGAGTTTATAGCCAAACAGGTAGTGTATTACAAAAGACTACACAGAGTGTACTTTGTTCATGCCATTCCCAAGTCTCCATCCGGAAAGATATTAAGAAAAGACCTCAAAGCAAAGCTGGCAAGCATAACCCAGATGGCCTAG 1632 0.5086 MILLNQMRKEKKQFKEEHLFRSKLPDIPISNNLPLHTYCFHKLPELSDRPCLIVGDKTYTYAETHLASRKFAAGLSNLGINKGDVIMILLPNSPEFVFSFMAASMIGAVATTANPFYTAAEISKQLTASKAKLIVTRSTYVHKLNVEDFKVITVDNPPENCLHFSAVSEADESELPEVEINPEDDTVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYMKPEDVVLCVLPLFHIFSMHSVMMCALRAGSGILLMEKFEIRELMEMIERHRVSVAMVVPPLVVAMIKNPRVEEYDLSSVRLVMSGAAPLGKELEEALRSRLPHAVLGQGYGMTEAGPVLSMCLGFAKQPFPSKSGSCGTVVRNAEIKVLDPETGSSLSHNQPGEICIRGPQIMKGYLNDEKATAATIDGEGWLHTGDIGYVDDDDEIFIVDRLKELIKFKGFQVPPAELEGFLVSHPSIVDAAVVPQMDDAAGEVPVAFVVSFDLTEEAIKEFIAKQVVYYKRLHRVYFVHAIPKSPSGKILRKDLKAKLASITQMA 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1657g00040 543 CDD 4CL 29 532 - -
Gabi1657g00040 543 SUPERFAMILY Acetyl-CoA synthetase-like 29 538 - -
Gabi1657g00040 543 Pfam AMP-binding enzyme 47 445 IPR000873 -
Gabi1657g00040 543 FunFam Long-chain-fatty-acid--CoA ligase FadD 21 440 - -
Gabi1657g00040 543 Gene3D - 440 539 IPR045851 -
Gabi1657g00040 543 FunFam 4-coumarate--CoA ligase 2 441 539 - -
Gabi1657g00040 543 Pfam AMP-binding enzyme C-terminal domain 454 526 IPR025110 -
Gabi1657g00040 543 Gene3D - 9 439 IPR042099 -
Gabi1657g00040 543 ProSitePatterns Putative AMP-binding domain signature. 189 200 IPR020845 -
Gabi1657g00040 543 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 16 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1657g00040 Gabi-Chr1657 214582 226413 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1657g00040 8 471 Monolignol Biosynthesis Gene Families AT3G21240 64.557 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1657g00040 K01904 - gmx:547492 844.343