Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1657g00039 ATGTCGGACGAGGAACACCATTTTGAGTCCAAGGCTGATGCCGGAGCCTCCAAGACCTATCCTCAGCAAGCTGGCACTATTCGCAAAAACGGTTACATCGTCATCAAGGATCGCCCCTGCAAGGTTGTTGAAGTTTCAACTTTCAAGACTGGTAAGCATGGTCATGCTAAGTGCCACTTTGTTGGAATTGATATTTTCACTGGCAAGAAGCTTGAAGATATTGTGCCCTCTTCCCACAACTGTGATGTTCCCCGTGTGAATCGTATTGACTACCAGTTAATTGATATTTCTGAGGATGGATTTGTGAGCCTGCTAACTGATAATGGTGGCACCAAGGATGACCTGAGGCTTCCAACTGATGAGAGTCTGCTTACTCAGCTTCAAAGAATCAACTTCTTCGTTCTGTCTTTGATGGAATAA 420 0.45 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKDRPCKVVEVSTFKTGKHGHAKCHFVGIDIFTGKKLEDIVPSSHNCDVPRVNRIDYQLIDISEDGFVSLLTDNGGTKDDLRLPTDESLLTQLQRINFFVLSLME 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1657g00039 139 MobiDBLite consensus disorder prediction 1 21 - -
Gabi1657g00039 139 Gene3D - 1 85 IPR014722 -
Gabi1657g00039 139 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 128 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Gabi1657g00039 139 PIRSF Transl_init_eIF5A 1 134 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Gabi1657g00039 139 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Gabi1657g00039 139 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Gabi1657g00039 139 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Gabi1657g00039 139 NCBIfam translation initiation factor IF-5A 17 121 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Gabi1657g00039 139 Gene3D - 86 131 IPR012340 -
Gabi1657g00039 139 SUPERFAMILY Nucleic acid-binding proteins 86 129 IPR012340 -
Gabi1657g00039 139 SMART eIF_5a_2 85 139 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Gabi1657g00039 139 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 86 128 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1657g00039 Gabi-Chr1657 211843 213135 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1657g00039 1 128 Eukaryotic Initiation Factors Gene Family AT1G13950 86.719 8.98e-81 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1657g00039 K03263 - gmx:113001159 249.595