Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1657g00034 ATGGGAACGAGATCGCGGCAATCATGTCGAGACGAAGAAGAGGAGGAGCTGCTAGGTTGTGGAACCACGAGTAGAGGCGCTGATAACGCTTTTCTCAAATTGAACAATCTTGACATACACGGCGATGATGCTGGATCACCCGGAGCAGTTGCCAAGAAGAAAAAGAGAGGCCAACGGGCTGTTGGAGGTGATAAGAGTGGAAGAGGGCTCCGCCAATTTAGTATGAAAGTTTGTGAGAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTGGCAGATGAACTTGTGGCTGAATTTTCTGATCCAATCAATAGTGATTTGACCCCTGATCAGCAACAATATGATGAGAAAAACATTCGTCGAAGGGTCTATGATGCTCTGAATGTTCTCATGGCAATGGATATTATTTCCAAGGATAAAAAGGAAATACAATGGAGGGGTCTTCCTCGTACTAGTCAGAATGACATTGAAGAACTAAAGGCAGAGCGTCTTGGGCTCAGAAATAGAATTGAAAAGAAAGCAGCCTATCTGCAAGAGCTCGAGGAGCAATTTGTAGGTCTTCAGAGCCTTATAGAACGAAATGAGCAATTATATAGCTCAGGAAATCCTCCCAGCGGAGGTGTATCTTTACCTTTCATTCTGGTACAGACACGTCCTCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTACATTTTGATTTCAATAGTACTCCTTTTGAGCTGCATTACGACAATTATGTTCTCAAGGCAATGAAATTTTGTGAGAGACCAGAGAGTGATAATATAACAAACAATATTACCAGTGGAGGTGAAGGTTCTAGCATGCCAGGCTTGTATCAGTCACAGGTTCCTCCTCCAGTTTCAAACGGGCCAGTTAGGCCTCCCACATCACCCCCACTTCCTGGAATATTAAAGGAACCGTTCCCCCGTTGTAGTAAGTGA 957 0.4378 MGTRSRQSCRDEEEEELLGCGTTSRGADNAFLKLNNLDIHGDDAGSPGAVAKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFSDPINSDLTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWRGLPRTSQNDIEELKAERLGLRNRIEKKAAYLQELEEQFVGLQSLIERNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHYDNYVLKAMKFCERPESDNITNNITSGGEGSSMPGLYQSQVPPPVSNGPVRPPTSPPLPGILKEPFPRCSK 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1657g00034 318 MobiDBLite consensus disorder prediction 267 291 - -
Gabi1657g00034 318 PANTHER TRANSCRIPTION FACTOR DP 24 287 IPR015648 GO:0005667|GO:0051726
Gabi1657g00034 318 SUPERFAMILY E2F-DP heterodimerization region 155 269 IPR037241 -
Gabi1657g00034 318 MobiDBLite consensus disorder prediction 1 22 - -
Gabi1657g00034 318 MobiDBLite consensus disorder prediction 42 68 - -
Gabi1657g00034 318 Pfam Transcription factor DP 156 288 IPR014889 -
Gabi1657g00034 318 MobiDBLite consensus disorder prediction 292 310 - -
Gabi1657g00034 318 CDD DP_DD 153 256 IPR014889 -
Gabi1657g00034 318 MobiDBLite consensus disorder prediction 1 19 - -
Gabi1657g00034 318 SUPERFAMILY "Winged helix" DNA-binding domain 68 149 IPR036390 -
Gabi1657g00034 318 Gene3D Transcription factor DP 154 280 IPR038168 -
Gabi1657g00034 318 FunFam Transcription factor-like protein DPB 154 278 - -
Gabi1657g00034 318 Pfam E2F/DP family winged-helix DNA-binding domain 68 148 IPR003316 GO:0005667|GO:0006355
Gabi1657g00034 318 Gene3D - 60 153 IPR036388 -
Gabi1657g00034 318 FunFam Transcription factor-like protein DPB 60 153 - -
Gabi1657g00034 318 SMART E2F_TDP_2 65 148 IPR003316 GO:0005667|GO:0006355
Gabi1657g00034 318 SMART DP_2 155 315 IPR014889 -
Gabi1657g00034 318 Coils Coil 164 198 - -
Gabi1657g00034 318 PIRSF Txn_factor_DP 2 312 IPR015648 GO:0005667|GO:0051726
Gabi1657g00034 318 MobiDBLite consensus disorder prediction 267 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1657g00034 Gabi-Chr1657 183750 187848 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1657g00034 42 257 E2F-DP Transcription Factor Family AT5G02470 52.074 8.36e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gabi1657g00034 DP 3.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1657g00034 K04683 - zju:107414839 491.5