Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1657g00029 ATGATGAGGCTGCAGACATATGCTGGTCTTAGTTTGATTGCAACTCTGGCTGTTACATATCATGCATTTAGCAGTAGAGGCCAGTTTTATCCAGCAATGGTTTATTTGGCAACTTCCAAGATCAGTTTGGTGCTTCTTCTCAACATGGGTCTAGTCATCATGTGTGTTCTCTGGCAGTTAACCAAAAAGGTTTTCCTTGGTTCCCTTCGTGAGGCTGAGGTCGAGAGGCTTAATGAGCAGTCATGGAGAGAGGTTATGGAAATCCTCTTTGCCATTACTATCTTTAGGCAGGACTTCTCTGTTACATTCCTTGTCATGGTCACGGCACTCTTGTTAATTAAGGCTTTGCATTGGTTGGCTCAGAAGAGAGTCGAGTACATAGAGACTACTCCTTCTGTGCCCATGTTGTCTCACATTCGAATTGTATCTTTTATGGGTTTCCTTCTTCTTCTAGATGGCCTCTTTTTGTATAGTTCTGCAAAGCATTTGATACTATCACGGCAGGCTTCGGTTTCACTCTTCTTTTCCTTTGAGTACATGATACTGGCAACAACAACTGTGTCAATTTTTGTAAAATATATTTTCTATGTCAGTGACATGCTTATGGAGGGACAATGGGAAAGGAAACCAGTCTTCACGTTTTACCTGGAACTTGTTAGGGACTTGCTTCACTTGTCTATGTATCTGTGCTTCTTTCTTGTAATTTTCATAAACTATGGCGTTCCTTTACACTTAATAAGGGAGCTGTACGAGACATTTAGGAACTTCAAAGTTCGTGTTGCGGATTACATACGTTATCGTAAGATTACTTCAAATATGAATGATCGGTTTCCAGATGCAACCCCTGAAGAGCTTAATGCAAGTGATGCAACCTGCATTATCTGTCGTGAAGAGATGACCACTGCCAAGAAACTTATATGCGGGCATCTCTTTCATGTTCATTGCCTCCGATCATGGTTGGAGCGGCAGCATACTTGCCCTACCTGCAGAGCACTGGTTGCACCGCCAGAAAATGGAACAACTGTTACTGGAGGGCAGCAAGGATCACAGTCAGATGCTCATCGACATGGGACAGGCAGTGGAAGCACTGCTCAAGCTGAGGTTGGGACTGGGGTGGCGGCTGATAATTTGAGTCGGCATCAAGCAAGACTCCAAGCTGCTGCTGCAGCAGCTTCAATATATGAGAAGTCTTATGTTTACCCCTCCACAACTTCTTTAGTATGCTCCCCTGGATACACTCCTCATCCCCCGGTTGAAAGATCTTTGGCTGGATCGTCAAGTACTGAGCTTAATGGAGACCAAACTTCCAATGAGCAAGCACAAAAGCAATTTGTTATCCCTGGTGGACCAATGAATGTATCCTTTCCTCCAATGGGAAACTTCTATTTTCTGCCTTCTCAAACAAATGCACCCCATATGAATTATGGAGAGGGGTCTGGAAATGATCCAAATATGCCAAACTCTCAGCTGGAAACTCAAAGAAAACTCCAGATTGAGTTTCTGCAAAATCAACTCCAACTGCTGCAAAATCAGCTTCAGCTTCTTCAGAAGACAAATGTTGACAAAAGTGTAGATGAGGGCACATCATCATCGTCATCAGACAGCAGAGGCAAGCACATCGCTGCCTCTTCATCTGTATCCAATCATGGCAGTCATGAGGAGATTCAAGACAGCAAACCATGA 1683 0.4367 MMRLQTYAGLSLIATLAVTYHAFSSRGQFYPAMVYLATSKISLVLLLNMGLVIMCVLWQLTKKVFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLVMVTALLLIKALHWLAQKRVEYIETTPSVPMLSHIRIVSFMGFLLLLDGLFLYSSAKHLILSRQASVSLFFSFEYMILATTTVSIFVKYIFYVSDMLMEGQWERKPVFTFYLELVRDLLHLSMYLCFFLVIFINYGVPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVAPPENGTTVTGGQQGSQSDAHRHGTGSGSTAQAEVGTGVAADNLSRHQARLQAAAAAASIYEKSYVYPSTTSLVCSPGYTPHPPVERSLAGSSSTELNGDQTSNEQAQKQFVIPGGPMNVSFPPMGNFYFLPSQTNAPHMNYGEGSGNDPNMPNSQLETQRKLQIEFLQNQLQLLQNQLQLLQKTNVDKSVDEGTSSSSSDSRGKHIAASSSVSNHGSHEEIQDSKP 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1657g00029 560 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 338 IPR013083 -
Gabi1657g00029 560 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 264 339 - -
Gabi1657g00029 560 MobiDBLite consensus disorder prediction 339 365 - -
Gabi1657g00029 560 MobiDBLite consensus disorder prediction 520 551 - -
Gabi1657g00029 560 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Gabi1657g00029 560 SUPERFAMILY RING/U-box 272 336 - -
Gabi1657g00029 560 PANTHER RING ZINC FINGER PROTEIN 1 530 - -
Gabi1657g00029 560 SMART ring_2 292 329 IPR001841 -
Gabi1657g00029 560 MobiDBLite consensus disorder prediction 337 365 - -
Gabi1657g00029 560 CDD RING-H2_synoviolin 289 330 - -
Gabi1657g00029 560 MobiDBLite consensus disorder prediction 520 560 - -
Gabi1657g00029 560 Coils Coil 491 518 - -
Gabi1657g00029 560 Pfam Ring finger domain 291 330 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1657g00029 Gabi-Chr1657 129013 134486 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1657g00029 1 544 C3H Transcription Factor Family AT3G16090 63.818 0.0 668
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1657g00029 K10601 - gmx:100816441 852.818