Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1657g00028 ATGATGAGGCTGCAGACATATGCTGGTCTTAGTTTGATTGCAACTCTGGCTGTTACATATCATGCATTTAGCAGTAGAGGCCAGTTTTATCCAGCAATGGTTTATTTGGCAACTTCCAAGATCAGTTTGGTGCTTCTTCTCAACATGGGTCTAGTCATCATGTGTGTTCTCTGGCAGTTAACCAAAAAGGTTTTCCTTGGTTCCCTTCGTGAGGCTGAGGTCGAGAGGCTTAATGAGCAGTCATGGAGAGAGGTTATGGAAATCCTCTTTGCCATTACTATCTTTAGGCAGGACTTCTCTGTTACATTCCTTGTCATGGTCACGGCACTCTTGTTAATTAAGGCTTTGCATTGGTTGGCTCAGAAGAGAGTCGAGTACATAGAGACTACTCCTTCTGTGCCCATGTTGTCTCACATTCGAATTCATTTGATACTATCACGGCAGGCTTCGGTTTCACTCTTCTTTTCCTTTGAGTACATGATACTGGCAACAACAACTGTGTCAATTTTTGTAAAATATATTTTCTATGTCAGTGACATGCTTATGGAGGGACAATGGGAAAGGAAACCAGTCTTCACGTTTTACCTGGAACTTGTTAGGGACTTGCTTCACTTGTCTATGTATCTGTGCTTCTTTCTTGTAATTTTCATAAACTATGGCGTTCCTTTACACTTAATAAGGGAGCTGTACGAGACATTTAGGAACTTCAAAGTTCGTGTTGCGGATTACATACGTTATCGTAAGATTACTTCAAATATGAATGATCGGTTTCCAGATGCAACCCCTGAAGAGCTTAATGCAAGTGATGCAACCTGCATTATCTGTCGTGAAGAGATGACCACTGCCAAGAAACTTATATGCGGGCATCTCTTTCATGTTCATTGCCTCCGATCATGGTTGGAGCGGCAGCATACTTGCCCTACCTGCAGAGCACTGGTTGCACCGCCAGAAAATGGAACAACTGTTACTGGAGGGCAGCAAGGATCACAGTCAGATGCTCATCGACATGGGACAGGCAGTGGAAGCACTGCTCAAGCTGAGGTTGGGACTGGGGTGGCGGCTGATAATTTGAGTCGGCATCAAGCAAGACTCCAAGCTGCTGCTGCAGCAGCTTCAATATATGAGAAGTCTTATGTTTACCCCTCCACAACTTCTTTAGTATGCTCCCCTGGATACACTCCTCATCCCCCGGTTGAAAGATCTTTGGCTGGATCGTCAAGTACTGAGCTTAATGGAGACCAAACTTCCAATGAGCAAGCACAAAAGCAATTTGTTATCCCTGGTGGACCAATGAATGTATCCTTTCCTCCAATGGGAAACTTCTATTTTCTGCCTTCTCAAACAAATGCACCCCATATGAATTATGGAGAGGGGTCTGGAAATGATCCAAATATGCCAAACTCTCAGCTGGAAACTCAAAGAAAACTCCAGATTGAGTTTCTGCAAAATCAACTCCAACTGCTGCAAAATCAGCTTCAGCTTCTTCAGAAGACAAATGTTGACAAAAGTGTAGATGAGGGCACATCATCATCGTCATCAGACAGCAGAGGCAAGCACATCGCTGCCTCTTCATCTGTATCCAATCATGGCAGTCATGAGGAGATTCAAGACAGCAAACCATGA 1623 0.4393 MMRLQTYAGLSLIATLAVTYHAFSSRGQFYPAMVYLATSKISLVLLLNMGLVIMCVLWQLTKKVFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLVMVTALLLIKALHWLAQKRVEYIETTPSVPMLSHIRIHLILSRQASVSLFFSFEYMILATTTVSIFVKYIFYVSDMLMEGQWERKPVFTFYLELVRDLLHLSMYLCFFLVIFINYGVPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVAPPENGTTVTGGQQGSQSDAHRHGTGSGSTAQAEVGTGVAADNLSRHQARLQAAAAAASIYEKSYVYPSTTSLVCSPGYTPHPPVERSLAGSSSTELNGDQTSNEQAQKQFVIPGGPMNVSFPPMGNFYFLPSQTNAPHMNYGEGSGNDPNMPNSQLETQRKLQIEFLQNQLQLLQNQLQLLQKTNVDKSVDEGTSSSSSDSRGKHIAASSSVSNHGSHEEIQDSKP 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1657g00028 540 SUPERFAMILY RING/U-box 252 316 - -
Gabi1657g00028 540 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 244 319 - -
Gabi1657g00028 540 MobiDBLite consensus disorder prediction 500 531 - -
Gabi1657g00028 540 MobiDBLite consensus disorder prediction 319 345 - -
Gabi1657g00028 540 SMART ring_2 272 309 IPR001841 -
Gabi1657g00028 540 PANTHER RING ZINC FINGER PROTEIN 1 510 - -
Gabi1657g00028 540 ProSiteProfiles Zinc finger RING-type profile. 272 310 IPR001841 -
Gabi1657g00028 540 Pfam Ring finger domain 271 310 IPR001841 -
Gabi1657g00028 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 318 IPR013083 -
Gabi1657g00028 540 MobiDBLite consensus disorder prediction 317 345 - -
Gabi1657g00028 540 Coils Coil 471 498 - -
Gabi1657g00028 540 CDD RING-H2_synoviolin 269 310 - -
Gabi1657g00028 540 MobiDBLite consensus disorder prediction 500 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1657g00028 Gabi-Chr1657 129013 134486 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1657g00028 1 524 C3H Transcription Factor Family AT3G16090 61.091 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1657g00028 K10601 - gmx:100816441 811.601