Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1657g00013 ATGGAAGATTTTAAACATAAATCAAAATCAATGAAAGAGGATTCTTCTGAGTTGAAGGAAGATGATTCTTCAAAGAGGAGTCACAGTCACAATCACAATCACAATCACAATCATCGTGATAAAGATAGAAACAATGGGAAGCTCAGGGATAGGGATAAGGATAAGAGGGATCGACGTGATAGAGACAAGAGCAATGATTCTGATCATCATGAATATGATAGAGAGAGGGATAAACGCAAAGACAAAGATAAGATTGAAAGAGTTAGAACTCGAGACAAGAAAAGAGAAAGAGACAGGGAAGATAAAGATAGGGAAAGGGAAAGAGAAAGAGGAGAAAGGGAGACGAGAGACAAGGTCAAGGAGAAAGAAAGAGAAAGAGAAAAGGAAAGGGGGAGAGAGAGGGAACGAGATAGAGATAAGGATAGGAGGGACCGTGATGGAGACAAGGAGATCGAAAGAAAAAGGGCGAGGCGAGTCCGTGATAGAGAGAAGCATAGGGAGGTTGATAGTGAATACAGTGATGATGATTCCAAGGAGAGAAACAGGAAGCGCCATAGGAAAGAGGATGATGATTACAAGGGGAGAGACAAGGAAAGGAGTGTTGGCAAGTCAAATAGGAAAATTGAAGATATTGATGCAAGCCCGAGAAGAAAGACCAGTGAAGATGACTCTGATACCAAAGATAAGGAGGGAAATCCTACCCATGAAGAGGAGATAGAGGCTGAACATAAGAGGTTGGATGAAGAAATGGAAAAGCGGAGGAGGAGAGTTCAGGAGTGGCAAGAGCTGAAGAGGAAGAGGGAAGAAGCAGAGAGAGAAAAGCATGGTGAAGCTAGTGCTAATGAACCAAAGTTGGGAAAGGCCTGGACCCTTGAAGGGGAATCTGATGATGAAGAAGGACCTGGTACGGGGAAGCCAGATATAGCTATGGATGTAGATGAAGATGAGAAACCCGTTGATAAGGAACCTGGGGATTCAATGGTGGTAGATGGTGATAATGGAACATTTGCATCTGATTTACAAGATGGAACTGCTGGTGCTCCCGCCGATGAGGAAATTGATCCGTTGGATGCTTTCATGAATTCTATGGTGCTACCTGAAGTTGAGAAGTTGAACAATGTTGTGCCCCCTTTAATTGCGGACAGAACTGATGACAAGAAGCCGAAGGATAGAGGGGATGAGCAAAGTCATGGTAGTCAGCTGAGGAAAGGTTCAAATAAATCTATTGGAAGAATAATACCAGGTGAAGAGTCTGACTCGGAATATGCAGATCTTGAAACTGAGGGTGACCAAATAGATGAAGATGACGACGAGTTCATGAAAAGAGTGAAGAAGACAAAAGCTGAAAAGCTTTCTATAGTTGACCATTCAAAAATTGATTATAATCCTTTCAAGAAAATTTTTTACATTGAAGTGAAAGAGATCTCAAAGATGACTCCTGAAGAAGTTGCCACATACAGGAAGGAGCTGGAGTTGAAGATACATGGAAAGGATGTCCCAAAGCCTATAAAGTCATGGCGTCAGACTGGTCTTCCTAGCAAAATATTGGAGATGATAAAGAAGCTTAACTATGAAAAGCCAATGCCTATTCAAGCTCAGGCACTGCCTGTAATTATGAGTGGTCGAGACTGCATAGGAGTTGCTAAAACTGGATCAGGCAAAACACTTGCTTTTGTTCTGCCTATGTTAAGGCACATCAAGGATCAACCACCTGTTGTTACTGGAGATGGACCTATTGGGCTTATTATGGCGCCTACAAGGGAACTTGTTCAACAGATTTACAGTGATATAAAGAAGTTTGGAAAGGTACTGGGTCTCAGGTGCGTACCTGTCTACGGAGGTTCGGGTGTTGCTCAACAAATTAGTGAGTTGAAACGCGGTGCTGAGATAGTGGTTTGTACTCCAGGGAGGATGATTGACATACTATGCACAAGTAGTGGAAAAATAACTAACCTGCGCAGAGTCACTTATCTGGTCATGGATGAGGCGGATCGAATGTTTGACATGGGCTTTGAACCTCAGATCACACGAATTGTTCAGAATATTCGACCAGATCGGCAAACTGTTCTCTTTTCTGCCACTTTCCCTCGTCAGGTTGAAATCCTGGCTCGTAAGGTTTTGAATAAACCTGTTGAATTACAAGTTGGTGGGAGGAGTGTTGTGAACAAGGACATAACACAGCTAGTTGAGGTGAGGCCTGATAATGAGAGGTTCTGGAGGCTCTTAGAGATATTGGGAGAATGGTATGAGAAAGGAAAGATTTTGATATTTGTCCACTCACAGGAGAAATGCGATGTTTTGTTCAAAGATTTGCTCAGGCATGGTTATCCTTGCCTCTCTCTTCATGGAGCTAAGGATCAGACAGATCGTGAATCCACAATTACTGATTTCAAAAGCAATGTCTGCAATTTATTGGTTGCAACAAGTATCGCTGCCAGGGGATTAGATGTCAAGGAGCTTGAATTGGTGATCAATTTTGATGTTCCTAACCACTATGAAGATTATGTACATCGTGTTGGCCGCACTGGCCGAGCTGGTCGAAAGGGTTGTGCTATTACTTTTATTTCTGAGGAAGAAGCAAGATATGCACCAGATCTGGCAAAAGCCTTGGAGCTATCTGAGCAAATTGTTCCTAATGATTTGAAAACTCTTGCTGATAGCTTTATGGCGAAAGTGAATCAAGGACTTGAGCAAGCCCATGGAACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAGGAAGATGAGGTGAGAAAAGCAGCAAAGAAAGCACAAGCCAAGGGATATGGGTTTGAAGAAGACAAGTCAGATTCTGAAGATGAAGATGAAGGTATTAGGAAGGCAGGAGGTGACATCTCACAGCATCCAGCTCTTGCACAGTTTCTTGCTGCCTCGAAAGTGAATTCACCGTCAATCCCTAGTCCTATCTCTGCTGCCCAGCTGATTTCTAATGGTGGACTACCTGTTTCTTTGCCAGCTGTTCTTGGTCTGCAGAATACAGCAGTGATGCCTGGGACAAGTCTGCCACTTGCCGCAAATGATGGGGCAACTCGAGCAGCATTAGCTGCCATAAACCTACAGCACAACTTAGCAAAGATACAATCTGAAGTAATGCCTGAGCATTATGAAGCTGAATTGGAGATAAATGATTTCCCCCAGAATGCTCGGTGGAAAGTCACGCACAAGGAAACACTGGGTCCAATTTCTGACTGGACTGGAGCTGCTATTACCACCAGGGGGCAGTTTTTTCCATCTGGCAAAGTCGCAGGACCTGGAGAACGCAAACTCTACTTGTTTATTGAGGGTCCTACTGAGCAGTCTGTTAAGAGAGCTAAAGCAGAGTTGAAGCGTGTTTTGGAAGACATCACAAATCAGGCTTTGCAACTTCCTGGTGGATCTCAGCCAGGCAAATACTCTGTTGTTTAG 3429 0.4337 MEDFKHKSKSMKEDSSELKEDDSSKRSHSHNHNHNHNHRDKDRNNGKLRDRDKDKRDRRDRDKSNDSDHHEYDRERDKRKDKDKIERVRTRDKKRERDREDKDRERERERGERETRDKVKEKEREREKERGRERERDRDKDRRDRDGDKEIERKRARRVRDREKHREVDSEYSDDDSKERNRKRHRKEDDDYKGRDKERSVGKSNRKIEDIDASPRRKTSEDDSDTKDKEGNPTHEEEIEAEHKRLDEEMEKRRRRVQEWQELKRKREEAEREKHGEASANEPKLGKAWTLEGESDDEEGPGTGKPDIAMDVDEDEKPVDKEPGDSMVVDGDNGTFASDLQDGTAGAPADEEIDPLDAFMNSMVLPEVEKLNNVVPPLIADRTDDKKPKDRGDEQSHGSQLRKGSNKSIGRIIPGEESDSEYADLETEGDQIDEDDDEFMKRVKKTKAEKLSIVDHSKIDYNPFKKIFYIEVKEISKMTPEEVATYRKELELKIHGKDVPKPIKSWRQTGLPSKILEMIKKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVVTGDGPIGLIMAPTRELVQQIYSDIKKFGKVLGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVELQVGGRSVVNKDITQLVEVRPDNERFWRLLEILGEWYEKGKILIFVHSQEKCDVLFKDLLRHGYPCLSLHGAKDQTDRESTITDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLAKALELSEQIVPNDLKTLADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRKAAKKAQAKGYGFEEDKSDSEDEDEGIRKAGGDISQHPALAQFLAASKVNSPSIPSPISAAQLISNGGLPVSLPAVLGLQNTAVMPGTSLPLAANDGATRAALAAINLQHNLAKIQSEVMPEHYEAELEINDFPQNARWKVTHKETLGPISDWTGAAITTRGQFFPSGKVAGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDITNQALQLPGGSQPGKYSVV 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1657g00013 1142 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 504 532 IPR014014 GO:0003724
Gabi1657g00013 1142 MobiDBLite consensus disorder prediction 289 327 - -
Gabi1657g00013 1142 Coils Coil 112 132 - -
Gabi1657g00013 1142 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 535 713 IPR014001 -
Gabi1657g00013 1142 Pfam Helicase conserved C-terminal domain 741 846 IPR001650 -
Gabi1657g00013 1142 SMART ultradead3 523 728 IPR014001 -
Gabi1657g00013 1142 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 659 667 IPR000629 -
Gabi1657g00013 1142 MobiDBLite consensus disorder prediction 375 437 - -
Gabi1657g00013 1142 Coils Coil 1106 1129 - -
Gabi1657g00013 1142 Coils Coil 236 273 - -
Gabi1657g00013 1142 CDD SF2_C_DEAD 725 855 - -
Gabi1657g00013 1142 CDD KH-I_AtRH42_like 1039 1141 - -
Gabi1657g00013 1142 MobiDBLite consensus disorder prediction 920 951 - -
Gabi1657g00013 1142 MobiDBLite consensus disorder prediction 1 28 - -
Gabi1657g00013 1142 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 651 886 IPR027417 -
Gabi1657g00013 1142 MobiDBLite consensus disorder prediction 920 950 - -
Gabi1657g00013 1142 MobiDBLite consensus disorder prediction 419 435 - -
Gabi1657g00013 1142 Pfam DEAD/DEAH box helicase 529 700 IPR011545 GO:0003676|GO:0005524
Gabi1657g00013 1142 Coils Coil 1 21 - -
Gabi1657g00013 1142 PANTHER RNA HELICASE 448 924 - -
Gabi1657g00013 1142 MobiDBLite consensus disorder prediction 38 281 - -
Gabi1657g00013 1142 Gene3D - 456 714 IPR027417 -
Gabi1657g00013 1142 MobiDBLite consensus disorder prediction 1 351 - -
Gabi1657g00013 1142 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 741 885 IPR001650 -
Gabi1657g00013 1142 Gene3D - 715 888 IPR027417 -
Gabi1657g00013 1142 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 435 862 IPR027417 -
Gabi1657g00013 1142 CDD DEADc_DDX46 493 714 - -
Gabi1657g00013 1142 MobiDBLite consensus disorder prediction 380 400 - -
Gabi1657g00013 1142 FunFam probable ATP-dependent RNA helicase DDX17 466 716 - -
Gabi1657g00013 1142 SMART helicmild6 765 846 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1657g00013 Gabi-Chr1657 70104 74749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1657g00013 491 866 Eukaryotic Initiation Factors Gene Family AT3G19760 31.662 3.79e-57 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1657g00013 K12811 - gmx:100784306 1607.42