Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1652g00001 ATGAACAACACTTCCATTAATTCTGACGACAACCCTTCAGATAACCAGCATGGTTATGCATATTATTCAATTGGGTTATCACTTATGGTTCTCATAGTGATCACAGTCTTAACTCTCATTTCTTATTATTGTAGCCGTGGAAGCTTGCAAAACAGGCAAGTGCGTGCCACTGCCAACACTAGCATGGAGCTAGATTCTTCTGCCTTAACCATCCAAATTCATCAAGAAGAAGCATCTTTGAACTGTTATCCGATGCTATTGTATTCTGAAGCAAAGCAGCATAAACCTGATTCAGCAACAATAACATCATGCTGCTCAATATGTTTGGCAGATTACAAGGACACAGATTTATTGCAGCTTCTACCTGATTGTGGTCACGCGTTTCATAGAGATTGCATTAACCGGTGGTTGCAGGTAAACCTCTCATGTCCGGTGTGTCGAACCACGCCACTTCCAACTCCTATTTCAACTCCTCTTGCCGAAGTTGTTCCCTTGGCAGCAAGACGTGATTAA 513 0.4211 MNNTSINSDDNPSDNQHGYAYYSIGLSLMVLIVITVLTLISYYCSRGSLQNRQVRATANTSMELDSSALTIQIHQEEASLNCYPMLLYSEAKQHKPDSATITSCCSICLADYKDTDLLQLLPDCGHAFHRDCINRWLQVNLSCPVCRTTPLPTPISTPLAEVVPLAARRD 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1652g00001 170 SUPERFAMILY RING/U-box 83 152 - -
Gabi1652g00001 170 SMART ring_2 105 146 IPR001841 -
Gabi1652g00001 170 Pfam Ring finger domain 105 147 IPR001841 -
Gabi1652g00001 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 151 IPR013083 -
Gabi1652g00001 170 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 161 IPR045899 -
Gabi1652g00001 170 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1652g00001 Gabi-Chr1652 18681 19193 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1652g00001 13 167 C3H Transcription Factor Family AT2G35910 46.835 9.07e-39 130